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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019511.1-P Field mustard cytosol 99.37 99.37
CDX77871 Canola cytosol 97.7 98.52
AT3G47660.4 Thale cress cytosol 80.04 77.37
VIT_17s0000g05980.t01 Wine grape endoplasmic reticulum 32.29 44.72
CDY70949 Canola cytosol 15.46 41.81
Solyc03g116360.1.1 Tomato cytosol 40.33 40.8
CDY66504 Canola cytosol 35.11 40.73
CDX69686 Canola nucleus 44.93 40.19
CDX85690 Canola nucleus 44.62 39.91
CDX91165 Canola nucleus 44.51 39.7
CDX97187 Canola nucleus 43.78 39.6
GSMUA_Achr4P00510_001 Banana cytosol 39.19 39.02
CDX87986 Canola cytosol 8.36 38.84
CDX92532 Canola nucleus 44.83 38.51
CDY28580 Canola plasma membrane 42.01 38.51
CDY13998 Canola nucleus 44.72 38.35
CDY44086 Canola plasma membrane, vacuole 42.11 38.31
TraesCS7A01G185400.1 Wheat cytosol 40.33 38.14
CDX88891 Canola cytosol, mitochondrion, nucleus 45.14 38.06
TraesCS7B01G090600.1 Wheat cytosol 40.54 38.04
CDX70876 Canola cytosol 44.31 38.03
TraesCS7D01G187100.3 Wheat cytosol 40.33 37.81
CDY47138 Canola cytosol 39.92 36.49
CDX88324 Canola cytosol 40.33 36.38
CDX87557 Canola cytosol 40.65 36.25
CDY11586 Canola cytosol 39.71 36.09
HORVU7Hr1G038070.12 Barley cytosol 35.11 35.63
CDY12764 Canola cytosol 37.72 34.45
CDY48550 Canola cytosol 35.21 34.39
PGSC0003DMT400001620 Potato cytosol 14.0 33.5
CDX85076 Canola cytosol 35.84 33.04
CDX68076 Canola cytosol 28.11 32.41
CDY49416 Canola cytosol 37.51 32.08
CDY43762 Canola cytosol 14.11 31.54
CDX84451 Canola cytosol 14.42 30.94
CDY46423 Canola cytosol 12.12 30.61
CDX77534 Canola cytosol 35.53 30.6
CDY31347 Canola cytosol 13.69 30.05
CDY31624 Canola cytosol 30.83 30.01
CDX81201 Canola cytosol 13.58 29.55
CDX87989 Canola cytosol 30.93 29.54
CDY60046 Canola cytosol 13.79 29.46
CDY16215 Canola cytosol 11.49 28.5
CDY39843 Canola cytosol 12.02 28.47
CDY69131 Canola cytosol 9.51 28.35
GSMUA_Achr7P20980_001 Banana cytosol 39.81 26.22
CDY44785 Canola mitochondrion 11.6 25.64
CDY40735 Canola mitochondrion 11.7 25.63
CDX69479 Canola cytosol 10.55 25.44
CDY43240 Canola cytosol 12.54 25.42
CDY57523 Canola cytosol 12.43 25.27
CDY26488 Canola cytosol 10.45 25.13
CDY02190 Canola mitochondrion 11.6 25.06
CDY51633 Canola mitochondrion 11.49 24.77
CDY04192 Canola cytosol 12.33 23.98
CDY39172 Canola cytosol 12.33 23.98
CDX96062 Canola plastid 12.96 23.94
CDY34733 Canola cytosol 8.36 23.88
CDY01845 Canola plastid 12.85 23.79
CDY13609 Canola cytosol 12.96 23.44
CDY56518 Canola cytosol, plastid 12.54 23.08
CDX83586 Canola cytosol, plastid 12.75 23.06
CDX97668 Canola cytosol 11.49 23.06
CDY56827 Canola cytosol 11.49 23.06
CDY28863 Canola cytosol 12.43 22.88
CDX99731 Canola cytosol, plastid 12.64 22.62
CDY40988 Canola cytosol, plastid 12.54 21.86
CDY14709 Canola nucleus 12.12 16.79
CDY21840 Canola endoplasmic reticulum, extracellular 11.81 13.68
CDY20113 Canola endoplasmic reticulum, extracellular 11.7 13.58
Protein Annotations
Gene3D:2.130.10.30Gene3D:2.30.29.30Gene3D:3.30.40.10MapMan:35.1GO:A0A078G5R2UniProt:A0A078G5R2
EnsemblPlants:CDY21795ProteinID:CDY21795ProteinID:CDY21795.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00016335001InterPro:IPR000408InterPro:IPR009091InterPro:IPR011993InterPro:IPR013083
InterPro:IPR017455PFAM:PF00415PFAM:PF01363InterPro:PH-like_dom_sfPRINTS:PR00633ScanProsite:PS00626
PFscan:PS50012PFscan:PS50178PANTHER:PTHR22870PANTHER:PTHR22870:SF244InterPro:RCC1/BLIP-IIInterPro:Reg_chr_condens
SMART:SM00064SUPFAM:SSF50729SUPFAM:SSF50985SUPFAM:SSF57903UniParc:UPI0004EEB0D1InterPro:Znf_FYVE
InterPro:Znf_FYVE-relInterPro:Znf_FYVE_PHDInterPro:Znf_RING/FYVE/PHDSEG:seg::
Description
BnaA06g20640DBnaA06g20640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5R2]
Coordinates
chrLK032124:+:341008..344477
Molecular Weight (calculated)
103790.0 Da
IEP (calculated)
8.405
GRAVY (calculated)
-0.381
Length
957 amino acids
Sequence
(BLAST)
001: MACSQRSLPT DRENEQAIAI LKKGAYLLKY GRRGKPKFYP FRLSSDEIFL LWYCGKTEKR LKLSSVTRII PGQRTSVFRR YPQPTKEYQS FSLIYGDRSL
101: DLVCKDKDEA EFWITTLRAL LSRNCSSSLV LHSRSRSFVP DYGGEQSSSN NNSLSNIRSV SSDTSCEEHA KKASGSHINT PQRLGKVFSE VLSQTAVLRA
201: LALDELVHKP HNTSPETLEN RATNNHSPAV DTSKYTVSSA LSSSSQGSTF EDLKSLCDVF VWGESNGDGL LLGCGGGGAM HKSESSSSLT AAETFLPKVL
301: KSHVALDAQS ISCGTNYAVL VTKQGQMYSW GEESGGRLGH GVCSYVPQPK LIDEFDGSAV ELADCGEFHT CAVTSSGDLY TWGDGAHNAG LLGLGSEASH
401: WKPVRILGQM EGINVKTISC GPWHTAFVTS EGKLFTYGDG TFGALGHGDR VSTSVPREAE ALSGCRTIKI ACGVWHSAAV VSVFGEAASS GKLFTWGDGE
501: DGKLGHGDKE SRLIPSCVAE LNATSFQQVA CGQSVTVALS ASGQVYAMGV LDPGHENVVK APSCIEGGLG KSCVQEVACG FHHIAVLNSK AEVYTWGRGS
601: NGQLGHGDTE NRRLPTLVRA LKGKQVRKVV CGSNYTATIC LHKPITGTDS SRCSGCRHPF NYMRKLHNCY NCGSVFCNAC TSKKSLAAAM APKTNRPYRV
701: CDDCYIKLEG VREYLGTPAN NSARFSNASL QSSINEMDDF GTTPQRQLLR VDSFDFFRQS KIPDLKTIGE TSGGSHASSS SGFNLKGIRQ LSRLASFDSV
801: NQEGKQRTKH CASKSDTSSL VRHSVTCGLP FSRRGSVELF PLSIKSSPVE SVGNTSDFTA DITDTEFLQE GTKKPNQCLN QEISVLKAQV EELTRKTKQL
901: EAELGTTSKK LEVAVLMQRD DAEKIKTSEE IVRSLTLQLM DATKKGVDKT RRRRSSF
Best Arabidopsis Sequence Match ( AT3G47660.2 )
(BLAST)
001: MACFQRSVPT DRENEQAIAI LKKGAYLLKY GRRGKPKFYP FRLSSDEIYL LWYCGKKEKR LKLSSVTRII PGQRTAVFRR YPQPTKEYQS FSLIYGERSL
101: DLVCKDKDEA EFWLTTLRAL LSRNNSSALV LHSRSRSLAP ENGEQSSSSQ NSKSNIRSVS SDTSYEEHAK KASGSHCNTP QRLGKVFSEV LSQTAVLKAL
201: SLDELVHKPH TSPPETIENR PTNHSSPGVD TSKYSISSAV SSSSQGSTFE DLKSLCDVFV WGESIGDGLL GGGMHKSGSS SSLMTDSFLP KVLKSHVALD
301: AQSISCGTNY AVLVTKQGQM YSWGEESGGR LGHGVCSYVP HPKLIDEFNG STVELADCGE FHTCAVTASG DLYAWGDGDH NAGLLGLGSG ASHWKPVRIL
401: GQMEGIYVKA ISCGPWHTAF VTSEGKLFTF GDGTFGALGH GDRISTNIPR EVEALNGCRT IKAACGVWHS AAVVSVFGEA TSSGKLFTWG DGDDGRLGHG
501: DIECRLIPSC VTELDTTSFQ QVACGQSITV ALSMSGQVYA MGTADPSHDI VRAPSCIEGG LGKSFVQEVA CGFHHIAVLN SKAEVYTWGK GSNGQLGHGD
601: TEYRCMPTLV KALKGKQVRK VVCGSNYTAT ICLHKPITGT DSTKCSGCRH PFNYMRKLHN CYNCGSVFCN SCTSKKSLAA AMAPKTNRPY RVCDDCYIKL
701: EGIRESLATP ANSARFSNAS LPSSYEMDEI GITPQRQLLR VDSFDFFRQT KHADLKTIGE TSGGSCTSSI HSNMDIKGSF NLKGIRRLSR LTSFDSVQEE
801: GKQRTKHCAS KSDTSSLIRH SVTCGLPFSR RGSVELFPLS IKSSPVESVA TTSDFTTDIT DHELLQEVPK KSNQCLSHEI SVLKAQVEEL TLKSKKLETE
901: LGKTSKKLEV AVLMARDDAE KIKSSEEIVR SLTLQLMNTT KKEVDKTRRH RNSF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLL5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.