CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92532	Canola	nucleus	94.44	94.61
AT5G19420.2	Thale cress	mitochondrion	90.23	88.41
CDX70876	Canola	cytosol	88.17	88.25
CDX88891	Canola	cytosol, mitochondrion, nucleus	89.43	87.93
CDX85690	Canola	nucleus	81.09	84.58
CDX91165	Canola	nucleus	81.09	84.34
CDX69686	Canola	nucleus	80.82	84.3
CDX97187	Canola	nucleus	79.66	84.03
KRH14571	Soybean	nucleus	76.88	77.51
VIT_06s0009g03550.t01	Wine grape	nucleus	76.79	77.42
KRH73555	Soybean	nucleus	76.43	76.99
Solyc12g099740.1.1	Tomato	nucleus	68.91	75.02
KRG99075	Soybean	nucleus	74.28	74.95
Solyc11g065120.1.1	Tomato	cytosol	75.45	74.58
KRH45937	Soybean	nucleus	73.84	74.3
Zm00001d042074_P001	Maize	cytosol	69.44	71.04
Os05t0384800-01	Rice	cytosol	68.82	70.72
HORVU0Hr1G028990.2	Barley	cytosol	24.91	70.56
GSMUA_Achr5P08220_001	Banana	cytosol	69.35	70.36
TraesCS1D01G240700.1	Wheat	cytosol	68.82	70.27
TraesCS1B01G252700.2	Wheat	cytosol	68.73	70.05
TraesCS1A01G240600.2	Wheat	cytosol	68.82	70.01
KXG34127	Sorghum	cytosol	57.8	69.96
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	58.51	69.84
Zm00001d011851_P001	Maize	cytosol	69.62	69.5
TraesCS3B01G543500.1	Wheat	cytosol	67.29	68.96
TraesCS3D01G489600.1	Wheat	cytosol	67.11	68.78
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	69.0	68.44
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	66.4	67.42
Os01t0952300-00	Rice	cytosol	67.38	65.79
CDY70949	Canola	cytosol	16.49	51.98
CDX88324	Canola	cytosol	47.85	50.33
CDY47138	Canola	cytosol	47.04	50.14
CDY66504	Canola	cytosol	37.01	50.06
CDY48550	Canola	cytosol	43.73	49.8
CDX87557	Canola	cytosol	47.76	49.67
CDY11586	Canola	cytosol	46.86	49.67
CDX87986	Canola	cytosol	8.87	48.06
CDY28580	Canola	plasma membrane	44.53	47.61
CDY44086	Canola	plasma membrane, vacuole	44.8	47.53
CDX68076	Canola	cytosol	34.59	46.51
CDX77871	Canola	cytosol	38.26	44.99
CDY21795	Canola	cytosol	38.35	44.72
CDY12764	Canola	cytosol	41.31	43.99
CDX85076	Canola	cytosol	40.5	43.55
CDY49416	Canola	cytosol	41.22	41.11
CDX77534	Canola	cytosol	40.5	40.68
CDY31624	Canola	cytosol	33.87	38.45
CDX87989	Canola	cytosol	33.78	37.62
CDY31347	Canola	cytosol	13.62	34.86
CDY43762	Canola	cytosol	13.17	34.35
CDY46423	Canola	cytosol	11.65	34.3
CDY69131	Canola	cytosol	9.86	34.27
CDX84451	Canola	cytosol	13.35	33.41
CDY60046	Canola	cytosol	13.35	33.26
CDX81201	Canola	cytosol	13.08	33.18
CDY16215	Canola	cytosol	11.38	32.9
CDY39843	Canola	cytosol	11.74	32.43
CDY44785	Canola	mitochondrion	11.74	30.25
CDY40735	Canola	mitochondrion	11.65	29.75
CDY34733	Canola	cytosol	8.6	28.66
CDY02190	Canola	mitochondrion	11.11	27.99
CDX69479	Canola	cytosol	9.95	27.96
CDY51633	Canola	mitochondrion	11.02	27.7
CDY26488	Canola	cytosol	9.86	27.64
CDY43240	Canola	cytosol	11.29	26.69
CDY57523	Canola	cytosol	11.2	26.54
CDX97668	Canola	cytosol	11.11	26.0
CDY56827	Canola	cytosol	11.11	26.0
CDX96062	Canola	plastid	11.74	25.29
CDY01845	Canola	plastid	11.65	25.15
CDY39172	Canola	cytosol	11.02	25.0
CDY04192	Canola	cytosol	11.02	25.0
CDY28863	Canola	cytosol	11.47	24.62
CDY56518	Canola	cytosol, plastid	11.38	24.42
CDY13609	Canola	cytosol	11.38	24.01
CDX83586	Canola	cytosol, plastid	11.2	23.63
CDX99731	Canola	cytosol, plastid	11.29	23.55
CDY40988	Canola	cytosol, plastid	10.93	22.22
CDY14709	Canola	nucleus	11.83	19.1
CDY20113	Canola	endoplasmic reticulum, extracellular	11.47	15.52
CDY21840	Canola	endoplasmic reticulum, extracellular	11.29	15.25

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078FNS1	UniProt:A0A078FNS1
InterPro:BRX_N	InterPro:Brevis_radix_dom	EnsemblPlants:CDY13998	ProteinID:CDY13998	ProteinID:CDY13998.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00078515001	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16627	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EE24D5
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaC09g38280DBnaC09g38280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNS1]

Coordinates

chrLK032039:-:743506..748604

Molecular Weight (calculated)

121935.0 Da

IEP (calculated)

8.648

GRAVY (calculated)

-0.462

Length

1116 amino acids

Sequence
(BLAST)

0001: MASGLSRADP VVARDIEQVQ CSIDHLYYLS SLFMAVTALK MGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRCP
0101: RPEKEYQSFS LIYDERSLDL ICKDKDEAQV WFTGLKAVIS RCHQRRFRTD SRSDETPSEA NSPRTYTRRS SPLHSPFSSN DSFLKDGSNH HCLHTPYESP
0201: PKNGIGKAFS DMTLYALPPK GYFPSDPASI SVHSLSSGAS DTIHGHIKGM GMDAFRVSLS SAISSSSHGS GHDDGDALGD VFIWGEGIGE GVLGGGNHIV
0301: GSSFEIKMDS LVPKALESSI VLDVQNIACG EQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LSTTNIELVA CGEYHSCAVS LSGDLYTWGK
0401: GDFGILGHGN EVSHWIPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGIWH TAAVVEVMVG
0501: SSSSSNCSSG KLFTWGDGDK NRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT LGHVYTVGSP VYGQLGNPHT DGKLPARVEG KLHKSFVEEI
0601: ACGAYHVAVL TSKTEVYTWG KGSNGRLGHG DADDRSSPTL VESLKDKQVK TIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC
0701: HSCSNKKSLK ACMAPNPNKP YRVCDKCYNK LKKTIEADAS SHSSLSRRES VNQGSDAVDR DEKLNSRSDG HLARFSLVEP MRQVESQSKK NKKYEFNSSR
0801: VSPIPSGGSH RGSLNVTKSF NPTFGSSKKF FSASVPGSRI VSRATSPVSR RLSPPARSTT PTPTLSGLTT PKIVVDDTKR TNDNISQEVV MLRTQVEILT
0901: RKAQLQEVEL ERTTKQLKEA LATAGEETAR CKAAKDVIKS LTAQLKDMAE RLHVGSARTI KSPSLNSFGS SPEYIAPSSN TPNRPNSRET DPDVLNTVPM
1001: FSNGTSTPVF DGASYRQQAN HAAEPINRIS TRAKESEPRN ENEWVEQDEP GVYITLTALA GGTRDLKRVR FSRKRFSEKQ AEEWWADNRG RVYEQYNVRI
1101: VVDKSSVGVG SEDLAH

Best Arabidopsis Sequence Match ( AT5G19420.2 )
(BLAST)

0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE
0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP
0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD
0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI
0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL
0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG
0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC
0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS
0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD
0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP
1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS
1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.