Factsheet for AT5G19420.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006504.1-P	Field mustard	cytosol	88.76	91.66
CDX70876	Canola	cytosol	88.59	90.49
CDX92532	Canola	nucleus	88.41	90.39
CDY13998	Canola	nucleus	88.41	90.23
CDX88891	Canola	cytosol, mitochondrion, nucleus	89.73	90.04
AT5G12350.1	Thale cress	nucleus	84.37	89.4
Bra002235.1-P	Field mustard	nucleus	86.48	88.42
KRH14571	Soybean	nucleus	78.4	80.67
KRH73555	Soybean	nucleus	78.05	80.23
VIT_06s0009g03550.t01	Wine grape	nucleus	77.79	80.04
KRG99075	Soybean	nucleus	76.47	78.75
KRH45937	Soybean	nucleus	75.77	77.82
Solyc11g065120.1.1	Tomato	cytosol	76.38	77.06
Solyc12g099740.1.1	Tomato	nucleus	68.92	76.59
HORVU0Hr1G028990.2	Barley	cytosol	25.37	73.35
Zm00001d042074_P001	Maize	cytosol	69.89	72.96
TraesCS1D01G240700.1	Wheat	cytosol	69.71	72.64
TraesCS1B01G252700.2	Wheat	cytosol	69.8	72.6
TraesCS1A01G240600.2	Wheat	cytosol	69.71	72.38
GSMUA_Achr5P08220_001	Banana	cytosol	69.89	72.36
Os05t0384800-01	Rice	cytosol	68.92	72.28
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	58.65	71.44
KXG34127	Sorghum	cytosol	57.77	71.37
Zm00001d011851_P001	Maize	cytosol	69.71	71.02
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	70.06	70.93
TraesCS3B01G543500.1	Wheat	cytosol	67.25	70.34
TraesCS3D01G489600.1	Wheat	cytosol	67.08	70.16
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	66.73	69.15
Os01t0952300-00	Rice	cytosol	68.04	67.8
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	49.34	52.13
AT1G69710.1	Thale cress	cytosol	45.65	49.95
AT1G76950.1	Thale cress	cytosol	48.11	49.68
AT3G23270.2	Thale cress	cytosol	41.0	44.31
AT3G47660.4	Thale cress	cytosol	37.31	42.93
AT4G14368.1	Thale cress	cytosol	40.12	41.32
AT1G65920.1	Thale cress	cytosol	34.68	39.26
AT5G63860.1	Thale cress	cytosol	13.78	35.68
AT1G27060.1	Thale cress	cytosol	11.94	35.23
AT5G08710.1	Thale cress	mitochondrion	12.2	32.03
AT3G02510.1	Thale cress	cytosol	10.01	29.01
AT5G16040.1	Thale cress	cytosol	9.66	27.78
AT5G60870.2	Thale cress	mitochondrion	10.97	27.65
AT3G15430.2	Thale cress	cytosol	11.5	26.84
AT3G02300.2	Thale cress	cytosol	11.15	26.35
AT3G26100.5	Thale cress	cytosol, plastid	11.5	24.62

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:832062	ProteinID:AED92704.1
ArrayExpress:AT5G19420	EnsemblPlantsGene:AT5G19420	RefSeq:AT5G19420	TAIR:AT5G19420	RefSeq:AT5G19420-TAIR-G	EnsemblPlants:AT5G19420.2
TAIR:AT5G19420.2	Unigene:At.21920	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	UniProt:F4K148
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	RefSeq:NP_001190338.1	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	PFAM:PF16627	InterPro:PH-like_dom_sf
InterPro:PH_domain	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0001E9319D	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]

Coordinates

chr5:-:6547638..6553242

Molecular Weight (calculated)

124683.0 Da

IEP (calculated)

9.090

GRAVY (calculated)

-0.540

Length

1139 amino acids

Sequence
(BLAST)

0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE
0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP
0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD
0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI
0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL
0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG
0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC
0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS
0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD
0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP
1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS
1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.