Factsheet for AT5G60870.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51633	Canola	mitochondrion	90.49	92.12
CDY02190	Canola	mitochondrion	89.6	91.42
Bra013002.1-P	Field mustard	mitochondrion	89.16	90.97
Solyc07g042980.2.1	Tomato	cytosol	38.05	70.78
GSMUA_Achr8P06920_001	Banana	cytosol	48.89	67.58
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	47.57	65.35
KRH46563	Soybean	mitochondrion	64.16	65.32
HORVU5Hr1G089510.1	Barley	cytosol	51.33	64.44
Zm00001d021372_P001	Maize	mitochondrion	59.29	62.04
EER97183	Sorghum	mitochondrion	59.29	62.04
Os09t0560450-01	Rice	mitochondrion	59.73	61.78
TraesCS5B01G366300.1	Wheat	mitochondrion	58.85	60.73
TraesCS5D01G373300.1	Wheat	mitochondrion	58.85	60.73
TraesCS5A01G364400.2	Wheat	mitochondrion	58.19	60.05
Solyc07g042970.2.1	Tomato	mitochondrion	30.09	56.43
Os04t0226400-01	Rice	plastid	20.8	43.32
AT5G16040.1	Thale cress	cytosol	21.46	24.49
AT3G02510.1	Thale cress	cytosol	20.35	23.41
AT1G27060.1	Thale cress	cytosol	19.69	23.06
AT5G63860.1	Thale cress	cytosol	21.9	22.5
AT5G08710.1	Thale cress	mitochondrion	19.25	20.05
AT3G02300.2	Thale cress	cytosol	19.03	17.84
AT3G15430.2	Thale cress	cytosol	16.59	15.37
AT3G26100.5	Thale cress	cytosol, plastid	17.48	14.85
AT5G12350.1	Thale cress	nucleus	26.99	11.35
AT1G69710.1	Thale cress	cytosol	25.66	11.14
AT3G47660.4	Thale cress	cytosol	24.34	11.11
AT5G19420.2	Thale cress	mitochondrion	27.65	10.97
AT1G65920.1	Thale cress	cytosol	23.45	10.54
AT1G76950.1	Thale cress	cytosol	25.66	10.52
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	24.34	10.2
AT3G23270.2	Thale cress	cytosol	23.45	10.06
AT4G14368.1	Thale cress	cytosol	24.56	10.04

Protein Annotations

MapMan:16.12.2.2.2	Gene3D:2.130.10.30	EntrezGene:836208	ProteinID:AED97389.2	ArrayExpress:AT5G60870	EnsemblPlantsGene:AT5G60870
RefSeq:AT5G60870	TAIR:AT5G60870	RefSeq:AT5G60870-TAIR-G	EnsemblPlants:AT5G60870.2	TAIR:AT5G60870.2	Unigene:At.50545
UniProt:F4K0I4	InterPro:IPR000408	InterPro:IPR009091	RefSeq:NP_974971.2	PFAM:PF00415	PO:PO:0000037
PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007057
PO:PO:0007115	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009052	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF244	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI00084951F3	SEG:seg	:	:	:	:

Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]

Coordinates

chr5:-:24485788..24487906

Molecular Weight (calculated)

48239.9 Da

IEP (calculated)

6.089

GRAVY (calculated)

-0.170

Length

452 amino acids

Sequence
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITGWDWFLTD GGELWMWGNA
401: KDFQLGVPGL PEIQTTPVEV NFLTEEDECQ PHKVISISIG ASHALCLVSR SP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.