Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70949 | Canola | cytosol | 30.1 | 93.79 |
| Bra003698.1-P | Field mustard | mitochondrion | 90.66 | 92.85 |
| CDX68076 | Canola | cytosol | 69.63 | 92.53 |
| CDY48550 | Canola | cytosol | 81.78 | 92.04 |
| CDX87557 | Canola | cytosol | 86.67 | 89.1 |
| Bra015708.1-P | Field mustard | cytosol | 86.58 | 88.92 |
| CDX88324 | Canola | cytosol | 85.4 | 88.78 |
| KRH08750 | Soybean | cytosol | 43.97 | 76.14 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 72.71 | 71.04 |
| PGSC0003DMT400002081 | Potato | cytosol | 72.35 | 70.87 |
| Solyc04g071040.2.1 | Tomato | cytosol | 72.08 | 70.6 |
| KRG91629 | Soybean | cytosol | 70.08 | 70.4 |
| KRH35179 | Soybean | cytosol | 71.35 | 70.27 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 68.63 | 70.22 |
| KRH70333 | Soybean | cytosol | 70.81 | 69.73 |
| KRH30228 | Soybean | cytosol | 25.2 | 68.3 |
| KRH08736 | Soybean | endoplasmic reticulum | 41.89 | 66.28 |
| Os01t0964800-01 | Rice | mitochondrion | 33.73 | 64.25 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 54.85 | 61.3 |
| KRH30227 | Soybean | cytosol | 24.93 | 60.98 |
| TraesCS1A01G020400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.05 | 60.86 |
| KXG34192 | Sorghum | cytosol | 50.05 | 60.53 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 49.68 | 60.42 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.77 | 60.4 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 60.2 | 60.09 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 49.41 | 60.09 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 49.41 | 60.02 |
| Zm00001d011805_P001 | Maize | cytosol | 49.41 | 59.76 |
| TraesCS3A01G512900.1 | Wheat | cytosol | 48.87 | 59.17 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 46.42 | 58.92 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 48.96 | 58.89 |
| EES18851 | Sorghum | cytosol, plastid | 48.87 | 58.84 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 48.59 | 58.77 |
| Os05t0106700-00 | Rice | mitochondrion | 49.68 | 58.3 |
| Zm00001d006773_P001 | Maize | cytosol | 21.03 | 57.57 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 50.86 | 57.3 |
| Os04t0686200-01 | Rice | plasma membrane | 54.31 | 56.67 |
| EES13137 | Sorghum | cytosol | 54.13 | 56.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.03 | 54.55 |
| TraesCS2A01G581400.1 | Wheat | cytosol | 52.67 | 54.3 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 52.67 | 54.3 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 52.67 | 54.3 |
| Zm00001d002876_P001 | Maize | mitochondrion | 53.49 | 54.28 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 52.95 | 54.28 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 8.16 | 53.89 |
| AT3G23270.2 | Thale cress | cytosol | 48.96 | 51.23 |
| AT5G12350.1 | Thale cress | nucleus | 49.14 | 50.42 |
| AT5G19420.2 | Thale cress | mitochondrion | 49.68 | 48.11 |
| AT4G14368.1 | Thale cress | cytosol | 47.05 | 46.93 |
| AT1G69710.1 | Thale cress | cytosol | 40.62 | 43.04 |
| AT3G47660.4 | Thale cress | cytosol | 34.63 | 38.59 |
| AT1G65920.1 | Thale cress | cytosol | 33.91 | 37.18 |
| AT5G63860.1 | Thale cress | cytosol | 13.24 | 33.18 |
| AT1G27060.1 | Thale cress | cytosol | 10.7 | 30.57 |
| AT5G16040.1 | Thale cress | cytosol | 10.34 | 28.79 |
| AT3G02510.1 | Thale cress | cytosol | 10.24 | 28.75 |
| AT5G08710.1 | Thale cress | mitochondrion | 11.15 | 28.34 |
| AT3G15430.2 | Thale cress | cytosol | 11.97 | 27.05 |
| AT5G60870.2 | Thale cress | mitochondrion | 10.52 | 25.66 |
| AT3G02300.2 | Thale cress | cytosol | 11.06 | 25.31 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 11.79 | 24.44 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:844030 | UniProt:A0A178WMI8 |
| ProteinID:AAC00618.1 | ProteinID:AEE35908.1 | EMBL:AF323270 | EMBL:AF462811 | EMBL:AK221913 | ArrayExpress:AT1G76950 |
| EnsemblPlantsGene:AT1G76950 | RefSeq:AT1G76950 | TAIR:AT1G76950 | RefSeq:AT1G76950-TAIR-G | EnsemblPlants:AT1G76950.1 | TAIR:AT1G76950.1 |
| Unigene:At.19186 | InterPro:BRX_N | EMBL:BT002726 | InterPro:Brevis_radix_dom | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0017112 |
| GO:GO:0035091 | GO:GO:0046872 | GO:GO:0065009 | GO:GO:0070300 | InterPro:IPR000408 | InterPro:IPR001849 |
| InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | RefSeq:NP_565144.1 |
| ProteinID:OAP19466.1 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | PFAM:PF16457 |
| InterPro:PH-like_dom_sf | InterPro:PH_domain | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00633 | Symbol:PRAF1 | ScanProsite:PS00626 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF91 | UniProt:Q947D2 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 |
| UniParc:UPI00000AADCD | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
Coordinates
chr1:+:28906441..28911584
Molecular Weight (calculated)
120401.0 Da
IEP (calculated)
8.277
GRAVY (calculated)
-0.461
Length
1103 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.