Factsheet for Bra015708.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87557	Canola	cytosol	99.63	99.72
Bra003698.1-P	Field mustard	mitochondrion	88.17	87.93
AT1G76950.1	Thale cress	cytosol	88.92	86.58
KRH08750	Soybean	cytosol	43.02	72.53
KRG91629	Soybean	cytosol	68.53	67.03
KRH35179	Soybean	cytosol	69.83	66.96
VIT_18s0166g00210.t01	Wine grape	cytosol	70.3	66.87
PGSC0003DMT400002081	Potato	cytosol	70.02	66.79
KRH70333	Soybean	cytosol	69.46	66.61
Solyc04g071040.2.1	Tomato	cytosol	69.74	66.52
Bra016214.1-P	Field mustard	cytosol	63.13	64.57
KRH30228	Soybean	cytosol	24.21	63.88
KRH08736	Soybean	endoplasmic reticulum	41.25	63.56
Os01t0964800-01	Rice	mitochondrion	33.43	62.0
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	54.47	59.27
KRH30227	Soybean	cytosol	24.67	58.76
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.26	58.32
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	49.07	58.1
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	48.88	57.88
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.98	57.87
GSMUA_Achr8P07850_001	Banana	cytosol	59.31	57.65
KXG34192	Sorghum	cytosol	48.6	57.24
Zm00001d011805_P001	Maize	cytosol	48.51	57.13
HORVU3Hr1G112690.2	Barley	cytosol, plastid	48.14	56.94
TraesCS3A01G512900.1	Wheat	cytosol	47.86	56.42
TraesCS3D01G522600.2	Wheat	cytosol	45.25	55.93
TraesCS3B01G581600.2	Wheat	cytosol	47.49	55.92
EES18851	Sorghum	cytosol, plastid	47.67	55.9
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	47.58	55.73
EES13137	Sorghum	cytosol	54.75	55.26
Os04t0686200-01	Rice	plasma membrane	54.19	55.06
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	50.09	54.95
Os05t0106700-00	Rice	mitochondrion	47.95	54.79
Zm00001d006773_P001	Maize	cytosol	20.2	53.85
TraesCS2D01G589800.1	Wheat	cytosol	53.45	53.64
TraesCS2B01G609200.1	Wheat	cytosol	53.35	53.55
TraesCS2A01G581400.1	Wheat	cytosol	53.17	53.36
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	53.35	53.25
Zm00001d002876_P001	Maize	mitochondrion	53.72	53.08
GSMUA_AchrUn_...	Banana	nucleus	56.7	52.82
HORVU3Hr1G108180.1	Barley	mitochondrion	7.82	50.3
Bra023740.1-P	Field mustard	cytosol	48.98	49.34
Bra008895.1-P	Field mustard	nucleus	48.6	49.06
Bra006504.1-P	Field mustard	cytosol	49.26	47.96
Bra023374.1-P	Field mustard	nucleus	48.79	47.12
Bra002235.1-P	Field mustard	nucleus	48.6	46.86
Bra019511.1-P	Field mustard	cytosol	36.03	40.44
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.11	39.84
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.25	38.26
Bra038181.1-P	Field mustard	cytosol	34.64	37.13
Bra024242.1-P	Field mustard	cytosol	12.76	33.33
Bra037755.1-P	Field mustard	cytosol	12.57	32.45
Bra029198.1-P	Field mustard	cytosol	12.38	32.28
Bra016304.1-P	Field mustard	cytosol	10.8	31.44
Bra024664.1-P	Field mustard	cytosol	9.5	28.41
Bra008654.1-P	Field mustard	cytosol	10.34	27.96
Bra028647.1-P	Field mustard	mitochondrion	11.36	27.92
Bra021435.1-P	Field mustard	cytosol	9.96	27.3
Bra039169.1-P	Field mustard	cytosol	11.92	27.18
Bra027244.1-P	Field mustard	cytosol	12.29	26.94
Bra013002.1-P	Field mustard	mitochondrion	10.61	25.73
Bra004253.1-P	Field mustard	plastid	12.2	25.29
Bra017335.1-P	Field mustard	cytosol	12.29	24.86
Bra004074.1-P	Field mustard	cytosol, plastid	11.82	24.47
Bra025182.1-P	Field mustard	cytosol	11.82	24.01
Bra036349.1-P	Field mustard	cytosol, plastid	11.36	22.22
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	12.01	15.69

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra015708
EnsemblPlants:Bra015708.1	EnsemblPlants:Bra015708.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4DGT2	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002541A30
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT1G76950 (E=0.0) PRAF1 | PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA07:+:21254754..21260193

Molecular Weight (calculated)

116836.0 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.429

Length

1074 amino acids

Sequence
(BLAST)

0001: MADLVSYSNA PPDHNVEQAL ITLKKGSQLL KYGRKGKPKF YPFRLSSDEK SLIWISSSGE KRLKLASVSK IVPGQRTAVF QRYLRPEKDY LSFSLLYNGK
0101: KKSLDLICKD KVEAEAWIGG LRALISAGQG GRSKIDGWNG GNISVDASRD LTSSSQSSSS ATTSHSHSSP GTPFSFDPIA SPKSEVPSTD SEKSHVLLDT
0201: KAMQTKVSGS DGFRVSVSSA QSSSSHGSGA DDADALGDVY IWGEVIISDN AVTTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG EIFTWGEESG
0301: GRLGHGMGKD VFNPRLVDSL ATNFDFVSCG EFHTCAVTLS GELYTWGDAT HSVGLLGHGS DISHWIPKRI AGPLEGLHVA SVACGPWHTA LVTSHGRLFT
0401: FGDGTFGVLG HGERETVRSP REVESLSGLR TIAVSCGVWH TAAVVEIIVA PQSNASSGKL FTWGDGDKNR LGHGDKDARL KPTCVPSLID YNFHRVACGH
0501: SLTVGLTTSG QVFTMGSTVY GQLGSLQTDG KVPCLVEDKL ASEFVEEISC GAYHVAVLTS RNEVYTWGKG ANGRLGHGDL EDRKVPTLVE GLKDRHVKYI
0601: ACGSSYTAAI CLHKWVSGAE QSQCSACRLA FGFTRKRHNC YNCGLVHCHS CSSKKAFGAA LAPSAGRLYR VCDVCYVKLS KVSDTSRRNS VVPRLSGENK
0701: DRLDKSEIRL AKFGASNVDL IKQLDSKAAK QGKKSSDNFR NSQLPSLLQL KDVVQSRSNA PKLVQAPSGI SSRSVSPFSR RSSPPPRSAT PLPSTSGIYF
0801: PVGMADNMKK TNEILNQEII KLRTQVDSLT QKCELQEVEL KNSVKKTQEA LALAEEESAK SRAAKEAIKS LIAQLKEVAE KLPPGESIKL ACLQNGFNFP
0901: EENGFLHSRS ESMTSSVSSV APSDFAFANA SSRSSLQSPN HTPRAFERNN GYPADPRLSS SGSVISERHE PFQFQNDNGS SHTGAVDSTN DVEAEWIEQY
1001: EPGVYITLVA LHDGTRELRR VRFSRRRFGE HQAETWWSEN REKVYEKYNV RVSEKPTASP THRDRDHEEE DVAQ

Best Arabidopsis Sequence Match ( AT1G76950.1 )
(BLAST)

0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH

Arabidopsis Description

PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.