Factsheet for Bra008895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69686	Canola	nucleus	98.78	98.22
AT5G12350.1	Thale cress	nucleus	93.14	92.19
Bra023374.1-P	Field mustard	nucleus	93.98	89.93
Bra006504.1-P	Field mustard	cytosol	86.0	82.96
Bra002235.1-P	Field mustard	nucleus	83.08	79.35
KRH14571	Soybean	nucleus	79.79	76.69
KRH73555	Soybean	nucleus	79.42	76.26
VIT_06s0009g03550.t01	Wine grape	nucleus	78.85	75.79
KRG99075	Soybean	nucleus	78.1	75.14
Solyc11g065120.1.1	Tomato	cytosol	78.85	74.31
KRH45937	Soybean	nucleus	77.35	74.21
Solyc12g099740.1.1	Tomato	nucleus	69.92	72.59
HORVU0Hr1G028990.2	Barley	cytosol	26.5	71.57
GSMUA_Achr5P08220_001	Banana	cytosol	73.5	71.09
Zm00001d042074_P001	Maize	cytosol	72.46	70.67
Os05t0384800-01	Rice	cytosol	71.62	70.17
TraesCS1D01G240700.1	Wheat	cytosol	71.99	70.08
TraesCS1B01G252700.2	Wheat	cytosol	71.99	69.95
TraesCS1A01G240600.2	Wheat	cytosol	72.09	69.92
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	60.71	69.09
Zm00001d011851_P001	Maize	cytosol	72.46	68.96
KXG34127	Sorghum	cytosol	59.68	68.87
TraesCS3B01G543500.1	Wheat	cytosol	70.39	68.78
TraesCS3D01G489600.1	Wheat	cytosol	70.21	68.59
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	72.18	68.27
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	69.08	66.88
Os01t0952300-00	Rice	cytosol	70.3	65.44
Bra016214.1-P	Field mustard	cytosol	50.19	50.86
Bra003698.1-P	Field mustard	mitochondrion	49.62	49.03
Bra015708.1-P	Field mustard	cytosol	49.06	48.6
Bra019511.1-P	Field mustard	cytosol	40.13	44.62
Bra023740.1-P	Field mustard	cytosol	43.89	43.81
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	47.09	43.26
Bra038181.1-P	Field mustard	cytosol	36.0	38.22
Bra029198.1-P	Field mustard	cytosol	14.19	36.65
Bra037755.1-P	Field mustard	cytosol	13.91	35.58
Bra024242.1-P	Field mustard	cytosol	13.72	35.52
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	42.11	35.28
Bra016304.1-P	Field mustard	cytosol	12.12	34.96
Bra024664.1-P	Field mustard	cytosol	10.71	31.75
Bra028647.1-P	Field mustard	mitochondrion	12.31	29.98
Bra021435.1-P	Field mustard	cytosol	10.53	28.57
Bra013002.1-P	Field mustard	mitochondrion	11.65	27.99
Bra039169.1-P	Field mustard	cytosol	12.12	27.39
Bra008654.1-P	Field mustard	cytosol	9.96	26.7
Bra027244.1-P	Field mustard	cytosol	11.94	25.92
Bra004253.1-P	Field mustard	plastid	11.94	24.52
Bra017335.1-P	Field mustard	cytosol	12.03	24.11
Bra025182.1-P	Field mustard	cytosol	11.94	24.01
Bra004074.1-P	Field mustard	cytosol, plastid	11.65	23.89
Bra036349.1-P	Field mustard	cytosol, plastid	11.37	22.04
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	12.12	15.69

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra008895
EnsemblPlants:Bra008895.1	EnsemblPlants:Bra008895.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4CXE8	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002543D38
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT5G12350 (E=0.0) | Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA10:-:14330031..14334128

Molecular Weight (calculated)

116421.0 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.539

Length

1064 amino acids

Sequence
(BLAST)

0001: MASDLSRAGP VERDIEQAII ALKKGAYLLK YGRRGKPKFC PFRLSNDETV LIWFSGKEEK HLKLSHVSRI ISGQRTPIFQ RYPRPEKEYQ SFSLIYSERS
0101: LDVICKDKDE AEVWFSGLKA LISRYHQRNR RTESRSDGTP SEANSPRTYT RRSSPLHSPF SSNDSLHRDG SNNLRIHSPF ESPPQLDKAL SEMALYAVPP
0201: KGFYPSDSGT ISVHSGGSDS MHGHMRGMGM DAFRVSMSSA VSGSSHGSGH DDGDALGDVF IWGEGIGEGV LGGGNRRVGS SFDIKMDSLL PKALESTVVL
0301: DVQNIACGGQ HAVLVTKQGE SFSWGEESEG RLGHGVDSNI QHPKLIDALN TTNIELVACG EFHSCAVTLS GDLYTWGKGD FGVLGHGNEV SHWVPKRVNF
0401: LFEGIHVSSI ACGPYHTAVV TSAGQLFTFG DGTFGVLGHG DRKSVFTPRE VDSLKGLRTV RAACGVWHTA AIVEVMVGSS SSSNCSSGKL FTWGDGDKCR
0501: LGHGNKEPKL VPTCVAALVE PNFCQVACGH SLTVALTTSG QVYTMGSPVY GQLGNSHADG KVPNRVEGKL HKNFVEEIAC GAYHVAVLTA RTEVYTWGKG
0601: SNGRLGHGDV DDRNSPTLVE SLKDKQVKSI ACGTNFTAAV CIHRRASGMA QPMCSGCRQP FNFKRKRHNC YNCGLVFCHS CSNKKSLKAC MAPNPNKPYR
0701: VCDKCFNKLK KTMETDGSSH SSLSRRGSIN QGSDPTDKDD KLDSRSDGQL ARFSLIDSKR QVDSGNKKNK KYEFSSSRVS PIPSRGSQRG ALNIAKTFNP
0801: VFGASKKFFS ASVPGSRIVS RATSPISRRP SPPRSTTPTP TLSGLTTPRI VLDDTKRTSD NISQEVVKLR SQVESLTRKA QFQEVELERT AKQLKEALAI
0901: ASEETTRCTA AKEVIKSLTA QLKDMAERLP VGTARTAKSP SSLNSFGSSP GRVDHFNILN RQNGQEPEPN TPMFSNGTTT PVFGNGEARN EAQTEKEWVE
1001: QDEPGVYITL TALAGGVRDL KRVRFSRKRF SEKQAEQWWA DNRGRVYEQY NVRMVDKTSE EMPR

Best Arabidopsis Sequence Match ( AT5G12350.1 )
(BLAST)

0001: MSRNGRMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGNEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K0X5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.