Factsheet for Bra004253.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96062	Canola	plastid	98.26	98.26
CDY01845	Canola	plastid	97.3	97.49
Bra004074.1-P	Field mustard	cytosol, plastid	84.75	84.59
Bra025182.1-P	Field mustard	cytosol	64.86	63.52
Bra017335.1-P	Field mustard	cytosol	64.67	63.09
Bra036349.1-P	Field mustard	cytosol, plastid	63.32	59.74
Bra027244.1-P	Field mustard	cytosol	25.29	26.73
Bra024242.1-P	Field mustard	cytosol	19.69	24.82
Bra021435.1-P	Field mustard	cytosol	18.53	24.49
Bra029198.1-P	Field mustard	cytosol	19.3	24.27
Bra008654.1-P	Field mustard	cytosol	18.53	24.18
Bra037755.1-P	Field mustard	cytosol	19.3	24.04
Bra016304.1-P	Field mustard	cytosol	15.64	21.95
Bra028647.1-P	Field mustard	mitochondrion	18.34	21.74
Bra024664.1-P	Field mustard	cytosol	15.06	21.73
Bra039169.1-P	Field mustard	cytosol	19.5	21.44
Bra013002.1-P	Field mustard	mitochondrion	14.29	16.7
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	24.9	15.69
Bra019511.1-P	Field mustard	cytosol	23.75	12.85
Bra016214.1-P	Field mustard	cytosol	25.48	12.57
Bra015708.1-P	Field mustard	cytosol	25.29	12.2
Bra038181.1-P	Field mustard	cytosol	23.36	12.08
Bra003698.1-P	Field mustard	mitochondrion	25.1	12.07
Bra008895.1-P	Field mustard	nucleus	24.52	11.94
Bra006504.1-P	Field mustard	cytosol	25.1	11.79
Bra023374.1-P	Field mustard	nucleus	24.71	11.51
Bra023740.1-P	Field mustard	cytosol	23.55	11.44
Bra002235.1-P	Field mustard	nucleus	24.32	11.31
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	24.32	10.88
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	23.17	9.45

Protein Annotations

EnsemblPlants:Bra004253.1	EnsemblPlants:Bra004253.1-P	EnsemblPlantsGene:Bra004253	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000254166C	UniProt:M4CJ69
MapMan:35.1	:	:	:	:	:

Description

AT3G26100 (E=2e-175) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA07:+:17654003..17655893

Molecular Weight (calculated)

55456.1 Da

IEP (calculated)

6.098

GRAVY (calculated)

-0.077

Length

518 amino acids

Sequence
(BLAST)

001: MDTTTTTSNS IVSPSTTLQL CSIIPENPLA AMELPLPSFL SLKRHCLGNN SAPGEFFLAS CPSIATCSFF RKPANFSPDL QLSISEVAAL DICLKKSIFE
101: HMGEEDRQEI KRKCGGSWKL VLRFLLAGEL GCRREKSQAL AGPGHSIAVT SKGVVYSFGS NTSGQLGQGT TEDTWQPRPI RSLSGIRIIQ AAIGADRTML
201: ISDAGEVYAF GKDCFSQPGL EDQETKLITT PQRVKSLTEI FVVQAAIGYH FTAVLSREGR VYTLSWGKDE RLGHGSDRNC VLPHPLLGPL ENIPVVQIAA
301: GFCYLLALAC QPTGMSVYSV GCGLGGKLGH GTQASEKQPR LIEEFSVLKM EPVMISAGTW HAAAVGRDGR VCTWGWGRFG CLGHGTGESE LAPKVVEGLK
401: NVKAVHVATG DYTTFVVSDD GQVYSFGSGE FANLGQQGDE DDNTLTPNLV SSLKEIKERV VHVSLTNSIS WGGHTFAMTE SGTVYAFGTG DRGQLGVELG
501: DNLTERAEPA KVVGIDLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.