Factsheet for Bra006504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88891	Canola	cytosol, mitochondrion, nucleus	99.55	96.74
CDX70876	Canola	cytosol	97.37	96.32
AT5G19420.2	Thale cress	mitochondrion	91.66	88.76
Bra002235.1-P	Field mustard	nucleus	88.4	87.52
Bra008895.1-P	Field mustard	nucleus	82.96	86.0
Bra023374.1-P	Field mustard	nucleus	83.95	83.27
KRH14571	Soybean	nucleus	79.33	79.04
VIT_06s0009g03550.t01	Wine grape	nucleus	79.15	78.86
KRH73555	Soybean	nucleus	78.6	78.25
KRG99075	Soybean	nucleus	77.33	77.12
KRH45937	Soybean	nucleus	76.7	76.28
Solyc11g065120.1.1	Tomato	cytosol	77.79	76.0
Solyc12g099740.1.1	Tomato	nucleus	69.81	75.12
HORVU0Hr1G028990.2	Barley	cytosol	26.02	72.84
Zm00001d042074_P001	Maize	cytosol	71.71	72.5
TraesCS1D01G240700.1	Wheat	cytosol	71.44	72.1
TraesCS1A01G240600.2	Wheat	cytosol	71.53	71.92
TraesCS1B01G252700.2	Wheat	cytosol	71.26	71.78
Os05t0384800-01	Rice	cytosol	70.44	71.55
KXG34127	Sorghum	cytosol	59.38	71.04
GSMUA_Achr5P08220_001	Banana	cytosol	70.72	70.91
Zm00001d011851_P001	Maize	cytosol	71.71	70.75
TraesCS3B01G543500.1	Wheat	cytosol	69.45	70.34
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	59.56	70.27
TraesCS3D01G489600.1	Wheat	cytosol	69.27	70.16
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	71.44	70.04
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	68.9	69.15
Os01t0952300-00	Rice	cytosol	69.72	67.28
Bra016214.1-P	Field mustard	cytosol	48.78	51.24
Bra003698.1-P	Field mustard	mitochondrion	48.59	49.77
Bra015708.1-P	Field mustard	cytosol	47.96	49.26
Bra019511.1-P	Field mustard	cytosol	39.08	45.04
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	45.78	43.61
Bra023740.1-P	Field mustard	cytosol	41.98	43.43
Bra038181.1-P	Field mustard	cytosol	35.36	38.92
Bra029198.1-P	Field mustard	cytosol	13.6	36.41
Bra037755.1-P	Field mustard	cytosol	13.33	35.34
Bra024242.1-P	Field mustard	cytosol	13.15	35.28
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.34	35.04
Bra016304.1-P	Field mustard	cytosol	11.7	34.96
Bra024664.1-P	Field mustard	cytosol	10.34	31.75
Bra028647.1-P	Field mustard	mitochondrion	11.7	29.52
Bra021435.1-P	Field mustard	cytosol	10.34	29.08
Bra013002.1-P	Field mustard	mitochondrion	11.33	28.22
Bra008654.1-P	Field mustard	cytosol	9.88	27.46
Bra039169.1-P	Field mustard	cytosol	11.6	27.18
Bra027244.1-P	Field mustard	cytosol	11.42	25.71
Bra004253.1-P	Field mustard	plastid	11.79	25.1
Bra017335.1-P	Field mustard	cytosol	12.06	25.05
Bra025182.1-P	Field mustard	cytosol	11.97	24.95
Bra004074.1-P	Field mustard	cytosol, plastid	11.6	24.66
Bra036349.1-P	Field mustard	cytosol, plastid	11.33	22.77
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.6	15.57

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra006504
EnsemblPlants:Bra006504.1	EnsemblPlants:Bra006504.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4CQL5	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	PFAM:PF16627	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI000253FF4C	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G19420 (E=0.0) | Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA03:-:3819586..3824607

Molecular Weight (calculated)

120225.0 Da

IEP (calculated)

9.106

GRAVY (calculated)

-0.513

Length

1103 amino acids

Sequence
(BLAST)

0001: MSRNARMTSD LSRAGGPVAR DVEQAITALK KGAYLLKYGT RGKPKFCPFR LSNDESVLIW FSGNEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYNERSLDV ICKDKDEAEV WFSGLKALIS RCHQRRWRTE SRSDGTPSEA TSPRTYTRRS SPLHSPFSSN ESFLKDGSNH HRLHSPYESP PKNGIDKAFS
0201: DMSLYALPPK GFFPSDPATI SVHSLSSGAS DSVHGHMKGM SMDAFRVSLS SAISSSSHGS GHDDGDALGD VFIWGEGIGE GVLGGGSHRV GSSFEIKMDS
0301: LVPKALESSI VLDVQNIACG GQHAVLVTKQ GETFSWGEES EGRLGHGVDS NVQHPKLIDA LGTTNIELVA CGEYHSCAVS LSGDLYTWGK GDFGILGHGN
0401: EVSHWIPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDKKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK GRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGNVYTMGSP VYGQLGNPHA DGKVPARVEG KLHKSFVEEI ACGAYHVAVL
0601: TAKTEVYTWG KGSNGRLGHG DVDDRNSPTL VESLRDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNLRRKRH NCYNCGLVFC HSCSSKKSLK
0701: ACMAPNQNKP FRVCDKCFNK LKKAMETDGS SHSSLSRRES VNQGSDAIDR DDKLDSRSDG QLTRFSLLEP VRQVDNRSKK NKKYEFNSSR VSPVPGSQRG
0801: SLNITKSFNP TFGVSKKFFS ASVPGSRIAS RATSPISRRP SPPRSTTPTP TLSGLITPRI VVDDTKRTND NVSQEVLMLR SQVENLTRRA QLQEAELERT
0901: TKQLKEALAI ASEETARCKA AKDVIKSLTA QLKDMAERLP VGSVRTIKSP SHNSFGSSPD YVAPSSNSLN RPNSRGSDPD GPNTIPMFAN GASTPVFDGA
1001: SFRQQANHAA ESINRNSTRA KESEARNENE WVEQDEPGVY ITLTALPGGA RDLKRVRFSR KRFSEKQAEE WWAENRGRVY EQYNVRLVVD KSSVGVGSED
1101: LAH

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.