Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G240700.1 | Wheat | cytosol | 95.56 | 98.35 |
| TraesCS1A01G240600.2 | Wheat | cytosol | 95.73 | 98.18 |
| TraesCS1B01G252700.2 | Wheat | cytosol | 95.56 | 98.17 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 32.27 | 92.13 |
| Os05t0384800-01 | Rice | cytosol | 88.0 | 91.16 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 79.2 | 81.07 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 74.76 | 76.45 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 61.87 | 74.44 |
| KRH14571 | Soybean | nucleus | 72.98 | 74.16 |
| KRH73555 | Soybean | nucleus | 72.89 | 74.01 |
| VIT_06s0009g03550.t01 | Wine grape | nucleus | 72.71 | 73.89 |
| KRG99075 | Soybean | nucleus | 72.44 | 73.69 |
| AT5G12350.1 | Thale cress | nucleus | 69.87 | 73.12 |
| KRH45937 | Soybean | nucleus | 71.64 | 72.68 |
| Solyc11g065120.1.1 | Tomato | cytosol | 72.89 | 72.63 |
| CDX85690 | Canola | nucleus | 69.07 | 72.62 |
| CDX91165 | Canola | nucleus | 68.98 | 72.32 |
| Bra008895.1-P | Field mustard | nucleus | 68.27 | 72.18 |
| CDX69686 | Canola | nucleus | 68.44 | 71.96 |
| Solyc12g099740.1.1 | Tomato | nucleus | 65.51 | 71.9 |
| VIT_13s0067g03380.t01 | Wine grape | endoplasmic reticulum, extracellular | 70.04 | 71.77 |
| CDX97187 | Canola | nucleus | 67.29 | 71.55 |
| Bra006504.1-P | Field mustard | cytosol | 70.04 | 71.44 |
| AT5G19420.2 | Thale cress | mitochondrion | 70.93 | 70.06 |
| Bra023374.1-P | Field mustard | nucleus | 68.98 | 69.78 |
| CDX92532 | Canola | nucleus | 69.07 | 69.75 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 70.22 | 69.6 |
| CDX70876 | Canola | cytosol | 68.71 | 69.33 |
| CDY13998 | Canola | nucleus | 68.44 | 69.0 |
| Bra002235.1-P | Field mustard | nucleus | 67.56 | 68.22 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 42.93 | 51.22 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 38.58 | 47.85 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 6.93 | 46.71 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 37.33 | 46.26 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 42.93 | 44.89 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 40.53 | 43.39 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 34.93 | 36.83 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 14.31 | 36.51 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 14.13 | 35.97 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 35.73 | 34.81 |
| HORVU5Hr1G089510.1 | Barley | cytosol | 9.78 | 30.56 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 10.76 | 30.48 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 10.04 | 27.29 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 10.04 | 24.89 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 10.58 | 24.79 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 11.73 | 24.72 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 9.51 | 23.78 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A287FR12 | InterPro:BRX_N |
| InterPro:Brevis_radix_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:HORVU1Hr1G056870 |
| EnsemblPlants:HORVU1Hr1G056870.2 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 |
| InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | PFAM:PF16627 |
| InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 |
| PANTHER:PTHR22870 | PANTHER:PTHR22870:SF212 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 |
| SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI000B476527 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:417153428..417162482
Molecular Weight (calculated)
122071.0 Da
IEP (calculated)
9.218
GRAVY (calculated)
-0.440
Length
1125 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMSDASSDLG GGRAGPVERD IEQAITALKK GAYLLKYGRR GKPKFCPFRL SNVSFIKLLY HRIFKSFIFA PSHLLISLAL LLLLQDESIL IWFSGKEEKQ
0101: LRLSHVSRII PGQRTAIFQR YPRPEKECQS FSLISHDRSL DIICKDKDEA EVWFAGLKTL ISRSHQRKWR TESRSDMLSS GTTSPRTYTR RSSPLSSPFS
0201: SNDSVHKDGS ENYRLRSPYG SPPKAGLDKA FSDIVSYAAP PRPFFPSDSN VGSVHSVSSG HSDNTNGNSR GIPMDAFRVS LSSAVSSSSH GSGHDDGDAL
0301: GDVFIWGEGT GEGILGGGNS RLGSSSGAKM DCLVPKPLEF AGRLDVQNIS CGGRHATLVT KQGEVYSWGE ESGGRLGHGV DCDVPQPKLI DALAHMNIEL
0401: VACGEYHTCA VTLSGDLYTW GNGTFNFGLS GHGNEVSHWM PKRLNGPLEG IHVSSISCGP WHTAVVTSAG QLFTFGDGSF GVLGHGDRQS ISVPREVESL
0501: KGLRTVRAAC GVWHTAAVVE VMVGNSSSSN CSSGKIFTWG DGDKGRLGHG DKETRLVPTC VASLVEPNFC QVACGHCFTV ALTTSGHVYT MGSSVYGQLG
0601: NPQADGMVPA RVEGKLHKNF VEEISCGAYH VAVLTSRTEV YTWGKGANGR LGHGDTDDRN SPTLVEALKD KQVRSVVCGI NFTAAICIHK WVSGVDQSMC
0701: SGCRLPFNLR RKRHNCYNCA LVFCHSCSSK KSLKASLAPN PNKPYRVCDS CYGKLNKGPE TDRYSSAKRG AILQGFNDSI NDDLETRSNV QLSRLSSMES
0801: FKNMDSRYSK KNKKFEFNSS RVSPIPNGSS HWSGLNISKS FGSSKKFFSA SVPGSRIASR ATSPVSRRTS PPRSTTPTPT LGGLTSPRVV VDGARPIKDN
0901: LSQEVVHLRS QVENLTRKSH LLEVELERTT KQLKEAISIA GEETAKCKAA KEVIKSLTAQ LKGMAEKLPE GAGAGAGAVK YNRLPPLSGV PVQNDISMAT
1001: ENLGSPRNSG EPYSNGSNGL TVSNGPSSVR NKTHLEVGKN GTRQPDSDSK PESEWVEQDE PGVYITLTAL PGGARDLKRV RFSRKRFSET QAEQWWQENR
1101: ARVYELYNVR VVDKSVASID SDVPH
0101: LRLSHVSRII PGQRTAIFQR YPRPEKECQS FSLISHDRSL DIICKDKDEA EVWFAGLKTL ISRSHQRKWR TESRSDMLSS GTTSPRTYTR RSSPLSSPFS
0201: SNDSVHKDGS ENYRLRSPYG SPPKAGLDKA FSDIVSYAAP PRPFFPSDSN VGSVHSVSSG HSDNTNGNSR GIPMDAFRVS LSSAVSSSSH GSGHDDGDAL
0301: GDVFIWGEGT GEGILGGGNS RLGSSSGAKM DCLVPKPLEF AGRLDVQNIS CGGRHATLVT KQGEVYSWGE ESGGRLGHGV DCDVPQPKLI DALAHMNIEL
0401: VACGEYHTCA VTLSGDLYTW GNGTFNFGLS GHGNEVSHWM PKRLNGPLEG IHVSSISCGP WHTAVVTSAG QLFTFGDGSF GVLGHGDRQS ISVPREVESL
0501: KGLRTVRAAC GVWHTAAVVE VMVGNSSSSN CSSGKIFTWG DGDKGRLGHG DKETRLVPTC VASLVEPNFC QVACGHCFTV ALTTSGHVYT MGSSVYGQLG
0601: NPQADGMVPA RVEGKLHKNF VEEISCGAYH VAVLTSRTEV YTWGKGANGR LGHGDTDDRN SPTLVEALKD KQVRSVVCGI NFTAAICIHK WVSGVDQSMC
0701: SGCRLPFNLR RKRHNCYNCA LVFCHSCSSK KSLKASLAPN PNKPYRVCDS CYGKLNKGPE TDRYSSAKRG AILQGFNDSI NDDLETRSNV QLSRLSSMES
0801: FKNMDSRYSK KNKKFEFNSS RVSPIPNGSS HWSGLNISKS FGSSKKFFSA SVPGSRIASR ATSPVSRRTS PPRSTTPTPT LGGLTSPRVV VDGARPIKDN
0901: LSQEVVHLRS QVENLTRKSH LLEVELERTT KQLKEAISIA GEETAKCKAA KEVIKSLTAQ LKGMAEKLPE GAGAGAGAVK YNRLPPLSGV PVQNDISMAT
1001: ENLGSPRNSG EPYSNGSNGL TVSNGPSSVR NKTHLEVGKN GTRQPDSDSK PESEWVEQDE PGVYITLTAL PGGARDLKRV RFSRKRFSET QAEQWWQENR
1101: ARVYELYNVR VVDKSVASID SDVPH
0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.