Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G200200.1 | Wheat | cytosol | 91.79 | 97.69 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 88.89 | 97.61 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 91.79 | 95.24 |
| Zm00001d050380_P004 | Maize | cytosol | 81.4 | 86.63 |
| KXG25196 | Sorghum | cytosol | 79.71 | 84.4 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 71.26 | 79.3 |
| Zm00001d032229_P002 | Maize | mitochondrion | 79.47 | 78.52 |
| PGSC0003DMT400032945 | Potato | extracellular | 71.98 | 76.21 |
| Solyc02g085780.2.1 | Tomato | cytosol | 71.74 | 76.15 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 72.46 | 75.95 |
| KRG93861 | Soybean | nucleus | 72.46 | 75.95 |
| Bra008654.1-P | Field mustard | cytosol | 71.01 | 74.06 |
| CDY34733 | Canola | cytosol | 59.9 | 74.03 |
| CDX69479 | Canola | cytosol | 70.53 | 73.55 |
| AT5G16040.1 | Thale cress | cytosol | 70.29 | 73.48 |
| CDY26488 | Canola | cytosol | 70.29 | 73.12 |
| AT3G02510.1 | Thale cress | cytosol | 68.84 | 72.52 |
| Bra021435.1-P | Field mustard | cytosol | 68.12 | 71.94 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 23.43 | 24.43 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 25.12 | 23.53 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 24.88 | 23.36 |
| HORVU5Hr1G089510.1 | Barley | cytosol | 19.81 | 22.78 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 23.43 | 21.37 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 22.46 | 19.38 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 17.39 | 18.27 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 7.0 | 17.37 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 21.74 | 16.85 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 17.39 | 16.0 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 26.09 | 11.91 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 25.12 | 11.45 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 24.88 | 10.92 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 26.81 | 10.56 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 27.29 | 10.04 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 26.57 | 10.01 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 24.64 | 9.48 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 23.43 | 8.4 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 21.26 | 8.25 |
| Os02t0684900-01 | Rice | cytosol | 0.0 | 0.0 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G062090.6 | EnsemblPlantsGene:HORVU7Hr1G062090 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI000B463B00 | UniProt:A0A287WP45 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr7H:-:296314673..296339619
Molecular Weight (calculated)
44426.7 Da
IEP (calculated)
6.818
GRAVY (calculated)
-0.186
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPSRPVAV LAWGSGEDGQ LGMGGCDEKD RARCICALDA YAVSAVVAGS RNSLAICDDG SLFTWGWNQR GTLGHPPETK TESSPAHVDA LVGVKIVQVS
101: VRSLFCNAIR FFCNACVIGF WCQAAIGGWH CLAVDDKGRA YAWGGNEYGQ CGEEPERKED GTRALRRDIP IPQRCALKLK VRQVAAGGTH SVVLTQEGHV
201: WTWGQPWPPG DIKNISTPVR VQGLEQVSMI AVGAFHNLAL SVDRILWAWG NNEYGQLGIG DTQPRSQPIR VEGLSNLSLV DIAAGGWHSA ALTKEGEVYA
301: WGRGEHGRLG FGDDKSSHMV PLQVQLLAGE DIVQVSCGGT HSVVLTSDGR IFSYGRGDHG RLGDGRKVTT GHPMEVPINL PPPKTSTSSE GLWQANYVAC
401: GGRHTLAIVT WTDM
101: VRSLFCNAIR FFCNACVIGF WCQAAIGGWH CLAVDDKGRA YAWGGNEYGQ CGEEPERKED GTRALRRDIP IPQRCALKLK VRQVAAGGTH SVVLTQEGHV
201: WTWGQPWPPG DIKNISTPVR VQGLEQVSMI AVGAFHNLAL SVDRILWAWG NNEYGQLGIG DTQPRSQPIR VEGLSNLSLV DIAAGGWHSA ALTKEGEVYA
301: WGRGEHGRLG FGDDKSSHMV PLQVQLLAGE DIVQVSCGGT HSVVLTSDGR IFSYGRGDHG RLGDGRKVTT GHPMEVPINL PPPKTSTSSE GLWQANYVAC
401: GGRHTLAIVT WTDM
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Arabidopsis Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.