Factsheet for Bra021435.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34733	Canola	cytosol	84.95	99.4
AT3G02510.1	Thale cress	cytosol	95.41	95.17
Bra008654.1-P	Field mustard	cytosol	88.01	86.9
KRG93861	Soybean	nucleus	81.12	80.51
PGSC0003DMT400032945	Potato	extracellular	80.1	80.31
Solyc02g085780.2.1	Tomato	cytosol	79.59	80.0
VIT_14s0006g03240.t01	Wine grape	cytosol	78.57	77.97
GSMUA_Achr9P15560_001	Banana	cytosol	72.19	76.08
Zm00001d050380_P004	Maize	cytosol	75.0	75.58
KXG25196	Sorghum	cytosol	74.49	74.68
TraesCS7D01G282600.1	Wheat	cytosol	71.43	74.27
TraesCS7B01G200200.1	Wheat	cytosol	72.19	72.75
TraesCS7A01G284800.1	Wheat	cytosol	72.45	71.18
Zm00001d032229_P002	Maize	mitochondrion	74.23	69.45
HORVU7Hr1G062090.6	Barley	cytosol	71.94	68.12
Bra016304.1-P	Field mustard	cytosol	23.98	25.47
Bra024664.1-P	Field mustard	cytosol	21.94	23.96
Bra024242.1-P	Field mustard	cytosol	25.0	23.84
Bra028647.1-P	Field mustard	mitochondrion	26.02	23.34
Bra037755.1-P	Field mustard	cytosol	24.74	23.32
Bra029198.1-P	Field mustard	cytosol	24.23	23.06
Bra013002.1-P	Field mustard	mitochondrion	23.47	20.77
Bra039169.1-P	Field mustard	cytosol	23.21	19.32
Bra017335.1-P	Field mustard	cytosol	26.02	19.21
Bra027244.1-P	Field mustard	cytosol	23.72	18.98
Bra025182.1-P	Field mustard	cytosol	25.26	18.71
Bra004253.1-P	Field mustard	plastid	24.49	18.53
Bra004074.1-P	Field mustard	cytosol, plastid	24.23	18.3
Bra036349.1-P	Field mustard	cytosol, plastid	25.0	17.85
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	22.96	10.95
Bra008895.1-P	Field mustard	nucleus	28.57	10.53
Bra023374.1-P	Field mustard	nucleus	29.34	10.34
Bra006504.1-P	Field mustard	cytosol	29.08	10.34
Bra023740.1-P	Field mustard	cytosol	27.3	10.04
Bra003698.1-P	Field mustard	mitochondrion	27.55	10.03
Bra016214.1-P	Field mustard	cytosol	26.79	10.0
Bra002235.1-P	Field mustard	nucleus	28.32	9.96
Bra015708.1-P	Field mustard	cytosol	27.3	9.96
Bra019511.1-P	Field mustard	cytosol	23.47	9.61
Bra038181.1-P	Field mustard	cytosol	23.98	9.38
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.77	8.72
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	26.79	8.27
Os02t0684900-01	Rice	cytosol	0.26	0.23
Os09t0560500-01	Rice	mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra021435.1	EnsemblPlants:Bra021435.1-P	EnsemblPlantsGene:Bra021435	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF206	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0002544ADF	UniProt:M4DY39
MapMan:35.1	:	:	:	:	:

Description

AT3G02510 (E=2e-211) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA01:-:25224691..25227015

Molecular Weight (calculated)

42241.9 Da

IEP (calculated)

6.091

GRAVY (calculated)

-0.351

Length

392 amino acids

Sequence
(BLAST)

001: MVSATSVIAW GSGEDGQLGI GSNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF TWGWNQKGTL GHPPETKTEN IPSRVKALAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTRDGH VWTWGQPWPP GDIKQIFVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLMAW GNNEYGQLGT GDTQPTPHPV PIQGLDGLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GFGDNDKSSK MVPQKVNLLA
301: DEVIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSLN HADEEEGKWL ATSIACGGRH TLAIVEWKSD DI

Best Arabidopsis Sequence Match ( AT3G02510.1 )
(BLAST)

001: MVTATSIIAW GSGEDGQLGI GTNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF TWGWNQRGTL GHQPETKTEN IPSRVKALAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q0WSJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.