Factsheet for Bra017335.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04192	Canola	cytosol	92.66	100.0
Bra025182.1-P	Field mustard	cytosol	91.71	92.06
AT3G26100.5	Thale cress	cytosol, plastid	88.89	88.72
Bra036349.1-P	Field mustard	cytosol, plastid	90.77	87.8
VIT_01s0137g00230.t01	Wine grape	cytosol	81.36	80.9
KRG97505	Soybean	cytosol	80.41	79.81
KRH31377	Soybean	cytosol	78.72	78.72
Solyc05g014030.2.1	Tomato	cytosol	77.4	77.11
PGSC0003DMT400027900	Potato	cytosol	77.4	77.11
GSMUA_AchrUn_...	Banana	cytosol, plastid	76.65	75.79
Os12t0284000-01	Rice	cytosol	75.52	75.09
GSMUA_Achr9P02110_001	Banana	plastid	74.58	73.61
HORVU5Hr1G034530.6	Barley	cytosol	73.82	73.41
KRH59226	Soybean	cytosol	73.07	72.66
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	22.6	69.36
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	28.44	67.71
Bra004253.1-P	Field mustard	plastid	63.09	64.67
Bra004074.1-P	Field mustard	cytosol, plastid	62.71	64.16
Bra027244.1-P	Field mustard	cytosol	24.86	26.94
Bra008654.1-P	Field mustard	cytosol	19.59	26.2
Bra021435.1-P	Field mustard	cytosol	19.21	26.02
Bra024242.1-P	Field mustard	cytosol	19.96	25.79
Bra037755.1-P	Field mustard	cytosol	19.77	25.24
Bra029198.1-P	Field mustard	cytosol	19.21	24.76
Bra016304.1-P	Field mustard	cytosol	15.25	21.95
Bra024664.1-P	Field mustard	cytosol	14.12	20.89
Bra039169.1-P	Field mustard	cytosol	17.89	20.17
Bra028647.1-P	Field mustard	mitochondrion	16.2	19.68
Bra013002.1-P	Field mustard	mitochondrion	15.63	18.74
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	24.86	16.06
Bra019511.1-P	Field mustard	cytosol	23.54	13.06
Bra016214.1-P	Field mustard	cytosol	25.24	12.76
Bra015708.1-P	Field mustard	cytosol	24.86	12.29
Bra003698.1-P	Field mustard	mitochondrion	24.48	12.07
Bra006504.1-P	Field mustard	cytosol	25.05	12.06
Bra008895.1-P	Field mustard	nucleus	24.11	12.03
Bra023740.1-P	Field mustard	cytosol	23.92	11.91
Bra023374.1-P	Field mustard	nucleus	24.29	11.6
Bra038181.1-P	Field mustard	cytosol	21.66	11.48
Bra002235.1-P	Field mustard	nucleus	23.73	11.31
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	23.16	10.62
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	22.98	9.61

Protein Annotations

EnsemblPlants:Bra017335.1	EnsemblPlants:Bra017335.1-P	EnsemblPlantsGene:Bra017335	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI00025421C6	UniProt:M4DLF4
MapMan:35.1	:	:	:	:	:

Description

AT3G26100 (E=1e-248) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA09:-:14371131..14373235

Molecular Weight (calculated)

57189.1 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.203

Length

531 amino acids

Sequence
(BLAST)

001: MDATTSGTPG LQYHNLPDQP VASPPVTTFQ RQKRQRFGDS TPGEFPLAAS PSIVLHVLTE CRLDPRDLAN LEATCSFFSQ PANFAPDCSL SLPELAALDM
101: CNKRMIFKPM KEEEREGMKR RCGGSWKLVL RFLLAGEACC RREKSQAIAG PGHSVAVTSK GQVYTFGYNN SGQLGHGHTD EEPRILPVRS LQGIRIIQAA
201: AGAGRTMLIS DNGSVYACGK DLFGEAEYGG KGSRLVTTPQ LVTSLKNIFV VQAAIGNFFT AILSREGKVY TFSWGNDGRL GHQTEANDLE PRPLLGPLEN
301: VPVVQIAAGY CYLLALTCEP NGMSVYSVGC GLGGKLGHGS KTDEKYPRVI EQFKVLNLQP RVVAAGAWHA AVVGQDGRVC TWGWGRYGCL GHGNEECESV
401: PKVVEGLSHV KAVHVATGDY TTFVVSEDGD VYSFGCGESA SLGHHPVLDE QGNRHGNVLS PAVVTSLKQA KERVVQISLT NSIYWNAHTF ALTESGKLFA
501: FGAGDKGQLG AELGRDLTER CVPEKVDIDL S

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.