Factsheet for VIT_01s0137g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97505	Soybean	cytosol	88.95	88.78
KRH31377	Soybean	cytosol	86.52	87.01
Solyc05g014030.2.1	Tomato	cytosol	83.52	83.68
PGSC0003DMT400027900	Potato	cytosol	83.33	83.49
CDY04192	Canola	cytosol	76.03	82.52
CDY39172	Canola	cytosol	75.84	82.32
GSMUA_AchrUn_...	Banana	cytosol, plastid	82.4	81.94
Bra025182.1-P	Field mustard	cytosol	80.9	81.66
CDX83586	Canola	cytosol, plastid	80.9	81.66
CDY13609	Canola	cytosol	80.9	81.66
Os12t0284000-01	Rice	cytosol	81.46	81.46
Bra017335.1-P	Field mustard	cytosol	80.9	81.36
AT3G26100.5	Thale cress	cytosol, plastid	80.34	80.64
KRH59226	Soybean	cytosol	79.21	79.21
CDX99731	Canola	cytosol, plastid	79.03	78.88
HORVU5Hr1G034530.6	Barley	cytosol	78.65	78.65
GSMUA_Achr9P02110_001	Banana	plastid	78.65	78.07
Bra036349.1-P	Field mustard	cytosol, plastid	78.28	76.14
CDY40988	Canola	cytosol, plastid	78.09	75.96
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	23.97	73.99
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	29.4	70.4
VIT_14s0006g03240.t01	Wine grape	cytosol	18.73	25.32
VIT_19s0014g03080.t01	Wine grape	cytosol	23.03	25.0
VIT_07s0031g02560.t01	Wine grape	cytosol	19.29	23.15
VIT_07s0031g02850.t01	Wine grape	mitochondrion	17.6	22.38
VIT_14s0083g01020.t01	Wine grape	cytosol	18.16	20.29
VIT_01s0026g01520.t01	Wine grape	cytosol	14.42	19.44
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	6.18	17.74
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	9.55	15.5
VIT_01s0026g02170.t01	Wine grape	cytosol	25.84	15.2
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	19.29	14.91
VIT_06s0009g03550.t01	Wine grape	nucleus	26.03	12.56
VIT_05s0049g01140.t01	Wine grape	cytosol	24.72	12.44
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	25.28	12.3
VIT_18s0166g00210.t01	Wine grape	cytosol	25.28	11.96
VIT_04s0079g00290.t01	Wine grape	cytosol	20.41	10.85

Protein Annotations

EntrezGene:100247438	wikigene:100247438	Gene3D:2.130.10.30	MapMan:35.1	EMBL:AM472325	ProteinID:CAN77314
ProteinID:CAN77314.1	ProteinID:CBI16837	ProteinID:CBI16837.3	UniProt:D7SMF8	EMBL:FN594954	InterPro:IPR000408
InterPro:IPR009091	EntrezGene:LOC100247438	wikigene:LOC100247438	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
TIGR:TC62384	UniParc:UPI00019828BA	ArrayExpress:VIT_01s0137g00230	EnsemblPlantsGene:VIT_01s0137g00230	EnsemblPlants:VIT_01s0137g00230.t01	unigene:Vvi.7760
RefSeq:XP_002285332	RefSeq:XP_002285332.1	RefSeq:XP_003631252	RefSeq:XP_003631252.1	RefSeq:XP_010650906.1	RefSeq:XP_010650911.1
RefSeq:XP_010650917.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:6727713..6732292

Molecular Weight (calculated)

57718.7 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.128

Length

534 amino acids

Sequence
(BLAST)

001: MDATRSGTPT VQYHNIPDQP IAAIVTSPLP TFQRQQRHCF GDSSPGEFPL AANPSIVLHV LTACNLEPQD LAKLEATCSF FRQPAHFAPD FELSISELAA
101: LDMCLKRAIF RPMMLEEREV LKQRCGGSWK LVLRFLLAGE ACCRREKSQA IAGPGHSIAV TVKGAVYSFG SNSSGQLGHG TTDEEWRPRQ IRSLEGIRII
201: QAAAGAGRTM LISDAGQVYA FGKDSFGEAE YGVQGTKLVT TPQLVESLKN IFVVQAAIGN FFTAVLSREG RVYTFSWGND AKLGHQTEAN DLEPHPLLGA
301: LENIPVVQIA AGYCYLLALA CQPNGMSVYS VGCGLGGKLG HGTRTDEKHP RLIEQFRILN LQPMVVAAGA WHAAVVGRDG RVCTWGWGRY GCLGHGNEEC
401: ESVPKVVEAL INVKAVHVAT GDYTTFVVSD DGDVYSFGCG ESSSLGHNNG PDGQGNRHAN ILSPELVTSL KQIKERMVQI SLTNSIYWNA HTFALTETGK
501: LYAFGAGDKG QLGVELVANQ TERGNPERVD IDLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.