Factsheet for HORVU5Hr1G034530.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0284000-01	Rice	cytosol	89.14	89.14
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	33.52	80.27
GSMUA_AchrUn_...	Banana	cytosol, plastid	80.15	79.7
VIT_01s0137g00230.t01	Wine grape	cytosol	78.65	78.65
KRG97505	Soybean	cytosol	78.65	78.5
KRH31377	Soybean	cytosol	77.15	77.59
CDY39172	Canola	cytosol	70.41	76.42
CDY04192	Canola	cytosol	70.04	76.02
PGSC0003DMT400027900	Potato	cytosol	75.84	75.98
Solyc05g014030.2.1	Tomato	cytosol	75.66	75.8
GSMUA_Achr9P02110_001	Banana	plastid	76.22	75.65
CDY13609	Canola	cytosol	73.97	74.67
Bra025182.1-P	Field mustard	cytosol	73.97	74.67
CDX83586	Canola	cytosol, plastid	73.78	74.48
CDX99731	Canola	cytosol, plastid	74.34	74.21
AT3G26100.5	Thale cress	cytosol, plastid	73.6	73.87
Bra017335.1-P	Field mustard	cytosol	73.41	73.82
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	23.6	72.83
Bra036349.1-P	Field mustard	cytosol, plastid	74.16	72.13
CDY40988	Canola	cytosol, plastid	73.97	71.95
KRH59226	Soybean	cytosol	71.16	71.16
HORVU2Hr1G083590.1	Barley	cytosol	46.82	55.56
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	21.16	25.62
HORVU6Hr1G030600.2	Barley	plasma membrane	19.29	23.3
HORVU1Hr1G016430.4	Barley	cytosol	16.85	22.67
HORVU7Hr1G062090.6	Barley	cytosol	16.85	21.74
HORVU3Hr1G108180.1	Barley	mitochondrion	6.18	19.76
HORVU5Hr1G089510.1	Barley	cytosol	13.11	19.44
HORVU5Hr1G053180.5	Barley	cytosol	17.04	18.96
HORVU0Hr1G028990.2	Barley	cytosol	12.36	16.75
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	14.23	16.74
HORVU7Hr1G038070.12	Barley	cytosol	21.54	12.2
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	24.34	11.83
HORVU1Hr1G078890.1	Barley	cytosol	23.22	11.8
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	24.72	11.73
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	19.85	11.69
HORVU3Hr1G112690.2	Barley	cytosol, plastid	19.48	11.45
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	22.1	10.97
HORVU6Hr1G066460.5	Barley	cytosol	21.16	10.59
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	22.85	10.56

Protein Annotations

EnsemblPlants:HORVU5Hr1G034530.6	EnsemblPlantsGene:HORVU5Hr1G034530	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000B46E157	UniProt:A0A287QU09	MapMan:35.1

Description

No Description!

Coordinates

chrchr5H:+:233793993..233799894

Molecular Weight (calculated)

57693.6 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.126

Length

534 amino acids

Sequence
(BLAST)

001: MDATMSSEVR SSLPRHLIVD DTISVVSPLQ QPFQRAQHHC FGDSAPGEFP LAANPSIVLH VLTSCNLYPE DLAHLEATCK FFRKPANFPP DFLLPMSELA
101: ALDMCQKRAI FKPMSTQERE MFKQRCGGSW KLVLRFIMAG EACCRREKSQ AIAGPGHSIA VSTSGAAYTF GSNNSGQLGH ASLEEEWRPR PVRSLQGIRI
201: IQAAAGAGRT MLVSDAGRVY AFGKDSFGEV EFGNQGSRAV ATPQMVESLK DIYIVQAAIG NFFTAVLSRE GCVYTFSWGS DMKLGHQTEP NDVQPHLLTG
301: PLENIPVVQI AAGYCYLLAL ACQPSGMSVY SVGCGLGGKL GHGTRTDEKY PRLIEQFQAL NIQPIVVAAG AWHAAVVGKD GRVCTWGWGR YGCLGHGNEE
401: CESVPKVVEA LSSVKAVYVA TGDYTTFIVS CKGDVYSFGC GESSSLGHNT TIEGNNRHSN VLSPELVTSL QSKNEKVVQV SLTNSVYWNA HTFALTESGK
501: LYAFGAGDKG QLGSELVSQE SERGTPERVE IDLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.