Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39172 | Canola | cytosol | 98.37 | 98.37 |
| Bra017335.1-P | Field mustard | cytosol | 100.0 | 92.66 |
| CDY13609 | Canola | cytosol | 92.89 | 86.39 |
| CDX83586 | Canola | cytosol, plastid | 92.68 | 86.2 |
| CDX99731 | Canola | cytosol, plastid | 92.07 | 84.67 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 90.24 | 83.46 |
| CDY40988 | Canola | cytosol, plastid | 90.65 | 81.24 |
| VIT_01s0137g00230.t01 | Wine grape | cytosol | 82.52 | 76.03 |
| KRG97505 | Soybean | cytosol | 81.5 | 74.95 |
| KRH31377 | Soybean | cytosol | 79.67 | 73.82 |
| Solyc05g014030.2.1 | Tomato | cytosol | 79.27 | 73.17 |
| PGSC0003DMT400027900 | Potato | cytosol | 79.27 | 73.17 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 78.66 | 72.07 |
| Os12t0284000-01 | Rice | cytosol | 77.85 | 71.72 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 76.63 | 70.07 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 76.02 | 70.04 |
| PGSC0003DMT400016865 | Potato | cytosol, extracellular, plastid | 24.39 | 69.36 |
| KRH59226 | Soybean | cytosol | 74.39 | 68.54 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 29.27 | 64.57 |
| CDX96062 | Canola | plastid | 64.84 | 61.58 |
| CDY28863 | Canola | cytosol | 64.63 | 61.15 |
| CDY01845 | Canola | plastid | 64.23 | 61.12 |
| CDY56518 | Canola | cytosol, plastid | 64.43 | 60.96 |
| CDX97668 | Canola | cytosol | 26.42 | 27.25 |
| CDY56827 | Canola | cytosol | 26.42 | 27.25 |
| CDX69479 | Canola | cytosol | 21.14 | 26.2 |
| CDY34733 | Canola | cytosol | 17.68 | 25.97 |
| CDY26488 | Canola | cytosol | 20.93 | 25.88 |
| CDY43762 | Canola | cytosol | 21.95 | 25.23 |
| CDX84451 | Canola | cytosol | 22.15 | 24.44 |
| CDX81201 | Canola | cytosol | 21.54 | 24.09 |
| CDY60046 | Canola | cytosol | 21.75 | 23.88 |
| CDY31347 | Canola | cytosol | 21.14 | 23.85 |
| CDY69131 | Canola | cytosol | 15.24 | 23.36 |
| CDY46423 | Canola | cytosol | 16.87 | 21.9 |
| CDY39843 | Canola | cytosol | 17.89 | 21.78 |
| CDY16215 | Canola | cytosol | 17.07 | 21.76 |
| CDY57523 | Canola | cytosol | 19.31 | 20.17 |
| CDY43240 | Canola | cytosol | 19.31 | 20.13 |
| CDY40735 | Canola | mitochondrion | 17.28 | 19.45 |
| CDY44785 | Canola | mitochondrion | 17.07 | 19.4 |
| CDY02190 | Canola | mitochondrion | 16.46 | 18.28 |
| CDY51633 | Canola | mitochondrion | 16.46 | 18.24 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 26.63 | 15.88 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 26.42 | 15.74 |
| CDY66504 | Canola | cytosol | 23.98 | 14.3 |
| CDY70949 | Canola | cytosol | 10.16 | 14.12 |
| CDX77871 | Canola | cytosol | 23.98 | 12.43 |
| CDY21795 | Canola | cytosol | 23.98 | 12.33 |
| CDY14709 | Canola | nucleus | 17.28 | 12.3 |
| CDY48550 | Canola | cytosol | 24.19 | 12.14 |
| CDY47138 | Canola | cytosol | 25.81 | 12.13 |
| CDY11586 | Canola | cytosol | 25.81 | 12.06 |
| CDX88324 | Canola | cytosol | 25.61 | 11.88 |
| CDX87557 | Canola | cytosol | 25.61 | 11.74 |
| CDX91165 | Canola | nucleus | 25.2 | 11.56 |
| CDX97187 | Canola | nucleus | 24.8 | 11.53 |
| CDX69686 | Canola | nucleus | 25.0 | 11.5 |
| CDX85690 | Canola | nucleus | 25.0 | 11.5 |
| CDX85076 | Canola | cytosol | 23.98 | 11.37 |
| CDY12764 | Canola | cytosol | 24.19 | 11.36 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 26.02 | 11.28 |
| CDX92532 | Canola | nucleus | 25.41 | 11.22 |
| CDY28580 | Canola | plasma membrane | 23.78 | 11.21 |
| CDY44086 | Canola | plasma membrane, vacuole | 23.78 | 11.12 |
| CDY31624 | Canola | cytosol | 22.15 | 11.09 |
| CDX70876 | Canola | cytosol | 25.0 | 11.03 |
| CDY13998 | Canola | nucleus | 25.0 | 11.02 |
| CDX87989 | Canola | cytosol | 22.36 | 10.98 |
| CDY49416 | Canola | cytosol | 24.19 | 10.63 |
| CDX77534 | Canola | cytosol | 23.98 | 10.62 |
| CDX87986 | Canola | cytosol | 4.07 | 9.71 |
| CDX68076 | Canola | cytosol | 11.99 | 7.11 |
Protein Annotations
| EnsemblPlants:CDY04192 | EnsemblPlantsGene:GSBRNA2T00117892001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF24 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ProteinID:CDY04192 | ProteinID:CDY04192.1 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI0004EEA32E |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA09g19700D
Coordinates
chrLK031949:+:1097243..1099346
Molecular Weight (calculated)
52825.0 Da
IEP (calculated)
6.731
GRAVY (calculated)
-0.146
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATTSGTPA SPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDCS LSLPELAALD MCNKRMIFKP MKEEEREGMK RRCGGSWKLV LRFLLAGEAC
101: CRREKSQAIA GPGHSVAVTS KGQVYTFGYN NSGQLGHGHT DEEPRILPVR SLQGIRIIQA AAGAGRTMLI SDNGSVYACG KDLFGEAEYG GKGSRLVTTP
201: QLVTSLKNIF VVQAAIGNFF TAILSREGKV YTFSWGNDGR LGHQTEANDL EPRPLLGPLE NVPVVQIAAG YCYLLALTCE PNGMSVYSVG CGLGGKLGHG
301: SKTDEKYPRV IEQFKVLNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES VPKVVEGLSH VKAVHVATGD YTTFVVSEDG DVYSFGCGES
401: ASLGHHPVLD EQGNRHGNVL SPAVVTSLKQ AKERVVQISL TNSIYWNAHT FALTESGKLF AFGAGDKGQL GAELGRDLTE RCVPEKVDID LS
101: CRREKSQAIA GPGHSVAVTS KGQVYTFGYN NSGQLGHGHT DEEPRILPVR SLQGIRIIQA AAGAGRTMLI SDNGSVYACG KDLFGEAEYG GKGSRLVTTP
201: QLVTSLKNIF VVQAAIGNFF TAILSREGKV YTFSWGNDGR LGHQTEANDL EPRPLLGPLE NVPVVQIAAG YCYLLALTCE PNGMSVYSVG CGLGGKLGHG
301: SKTDEKYPRV IEQFKVLNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES VPKVVEGLSH VKAVHVATGD YTTFVVSEDG DVYSFGCGES
401: ASLGHHPVLD EQGNRHGNVL SPAVVTSLKQ AKERVVQISL TNSIYWNAHT FALTESGKLF AFGAGDKGQL GAELGRDLTE RCVPEKVDID LS
001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.