CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31624	Canola	cytosol	94.21	96.03
CDX87986	Canola	cytosol	19.16	93.2
AT1G65920.1	Thale cress	cytosol	84.23	83.9
VIT_04s0079g00290.t01	Wine grape	cytosol	49.3	49.15
Solyc02g036390.1.1	Tomato	cytosol	37.23	47.52
KRG98005	Soybean	cytosol	49.9	46.73
KRH30884	Soybean	cytosol	49.7	46.37
PGSC0003DMT400043094	Potato	nucleus	49.1	45.72
GSMUA_Achr1P02140_001	Banana	cytosol	39.62	44.46
GSMUA_Achr5P11650_001	Banana	cytosol	40.92	42.27
Zm00001d017641_P004	Maize	cytosol	35.43	41.23
TraesCS6A01G261000.1	Wheat	cytosol	35.93	39.43
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	40.22	39.09
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	39.72	38.91
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	40.22	38.31
CDY66504	Canola	cytosol	31.14	37.82
TraesCS6D01G241800.1	Wheat	cytosol	39.42	37.23
Os04t0583700-00	Rice	cytosol	38.32	37.14
KXG26989	Sorghum	cytosol	39.52	37.11
TraesCS6B01G288400.1	Wheat	cytosol	39.42	37.02
HORVU6Hr1G066460.5	Barley	cytosol	38.92	36.55
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	38.92	36.35
Zm00001d051479_P005	Maize	nucleus	38.82	36.15
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	39.92	36.04
CDY70949	Canola	cytosol	12.67	35.88
CDX97187	Canola	nucleus	37.72	35.73
CDX69686	Canola	nucleus	38.12	35.7
CDX85690	Canola	nucleus	37.62	35.23
CDX88324	Canola	cytosol	37.13	35.06
CDY47138	Canola	cytosol	36.53	34.96
CDX91165	Canola	nucleus	37.43	34.95
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	39.92	34.63
CDY11586	Canola	cytosol	36.33	34.57
CDX87557	Canola	cytosol	36.93	34.48
CDX92532	Canola	nucleus	38.12	34.29
CDX88891	Canola	cytosol, mitochondrion, nucleus	38.52	34.01
CDY13998	Canola	nucleus	37.62	33.78
CDX70876	Canola	cytosol	37.43	33.63
CDX85076	Canola	cytosol	34.83	33.62
CDY48550	Canola	cytosol	32.83	33.57
CDY28580	Canola	plasma membrane	34.13	32.76
CDY12764	Canola	cytosol	34.23	32.73
CDY44086	Canola	plasma membrane, vacuole	34.23	32.6
CDY31347	Canola	cytosol	13.87	31.88
CDY43762	Canola	cytosol	13.47	31.54
CDX68076	Canola	cytosol	26.05	31.45
CDX81201	Canola	cytosol	13.77	31.36
CDY60046	Canola	cytosol	13.97	31.25
CDX77534	Canola	cytosol	34.63	31.23
CDX84451	Canola	cytosol	13.87	31.17
CDY39843	Canola	cytosol	12.47	30.94
CDY21795	Canola	cytosol	29.54	30.93
CDX77871	Canola	cytosol	29.24	30.87
CDY49416	Canola	cytosol	34.03	30.47
CDY69131	Canola	cytosol	9.08	28.35
CDY46423	Canola	cytosol	10.68	28.23
CDY16215	Canola	cytosol	10.58	27.46
CDY43240	Canola	cytosol	12.38	26.27
CDY57523	Canola	cytosol	12.28	26.11
CDY40735	Canola	mitochondrion	10.88	24.94
CDY44785	Canola	mitochondrion	10.78	24.94
CDY02190	Canola	mitochondrion	10.98	24.83
CDY51633	Canola	mitochondrion	10.98	24.77
CDY34733	Canola	cytosol	8.18	24.48
Solyc02g081250.1.1	Tomato	cytosol	49.6	23.81
CDX96062	Canola	plastid	12.28	23.75
CDY01845	Canola	plastid	12.18	23.6
CDY28863	Canola	cytosol	11.98	23.08
CDX69479	Canola	cytosol	9.08	22.92
CDY56518	Canola	cytosol, plastid	11.88	22.88
CDX97668	Canola	cytosol	10.88	22.85
CDY56827	Canola	cytosol	10.88	22.85
CDY26488	Canola	cytosol	8.98	22.61
CDY04192	Canola	cytosol	10.98	22.36
CDY39172	Canola	cytosol	10.88	22.15
CDY13609	Canola	cytosol	11.28	21.36
CDX99731	Canola	cytosol, plastid	11.38	21.31
CDX83586	Canola	cytosol, plastid	11.18	21.17
CDY40988	Canola	cytosol, plastid	10.78	19.67
CDY14709	Canola	nucleus	10.88	15.77
CDY21840	Canola	endoplasmic reticulum, extracellular	11.38	13.8
CDY20113	Canola	endoplasmic reticulum, extracellular	11.28	13.7

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DHT3	InterPro:Brevis_radix_dom
EnsemblPlants:CDX87989	ProteinID:CDX87989	ProteinID:CDX87989.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00147369001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993
InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EEF8CA	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC03g54070D

Coordinates

chrLK031853:-:1520081..1524189

Molecular Weight (calculated)

110622.0 Da

IEP (calculated)

9.121

GRAVY (calculated)

-0.455

Length

1002 amino acids

Sequence
(BLAST)

0001: MGEQHISATV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CHFKLSMDEK YLIWYSGQDE RQLRLSSVIT IVRGQITPKF QKQAQPDRKE QSFSLVYANG
0101: EYTLDLICKD KAQAGSWFKG LRAVITKHHN ARSSVNLRTS RGAQSCINSP AGFIHRKQNL GLLEETPDFT QIRSLCASPS TLLEERCLWL SGSSDSFYSM
0201: ESAGSDGLGP VSPYYEADYN SRRSDCDQTG SELSIYVSPS HTVTQPTARS NVLKDVMIWG ATRGLIEGSK NQNDALSPQL LESATMFDVQ SISLGAKHAA
0301: LVTRQGEVFC WGNGNSGKLG LKVNLDIDHP KRVESLKGVA VGSVACSDNQ TCAVTESGEL YLWGIDGGTI GESGRQFLTR KIADVFGRSL RVYSVACGAW
0401: HTAIVTFSGQ LYTYGSGTFG VLGHGSLESV TKPKEVESLK RMKVVSVSCG PWHTAAIVET STIDRKYHKA KSCGKLFTWG DGDKGRLGHV DSKRKLVPTC
0501: VSELIDQDFV KVSCGWTLTV ALSNRGTVYT MGSSIHGQLG CPRAKDKSIN TVLGNLTRQF VKEIACGSHH VAVLTSFGNV YTWGKGANGQ LGLGDVRDRN
0601: SPVLVESLGD RLVETIACGL SLTAAICLHK DISLTDQSTC SSCKSAFGFT RKKHNCYNCG LLFCNACSSK KAVKASLAPN KGKLSRVCDS CFNHLWRITE
0701: FSNKVKMDNR TPRMQLVTNA RRVSDNSTET ESENQIQNIP QANRSSDGQP RWGQVSAPSL FLFDKMSLSL TSPENISVSS RRRPSSTKIS TSSETNKIFI
0801: DEIERLKAEV RNLQKQCELG NEKIEECQRE FEKTSEVAKE EAEKAKVAKE IIKAMASRLQ TNKEKPNNPK TGIACNPSKV SPIFDDSVSV PYLTPITTTC
0901: SQSKDKQIVE KCSSRESNIR LLVDASPAIT RTGHMKNGTQ ESTAEQVEQY EPGVYITFTA LPCGQKTLKR VRFSRKRFSE KEAQRWWEEK QVLVYNKYDA
1001: EA

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.