Factsheet for GSMUA_Achr1P02140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11650_001	Banana	cytosol	81.41	74.95
CDX87986	Canola	cytosol	11.53	50.0
Zm00001d017641_P004	Maize	cytosol	44.46	46.11
TraesCS6A01G261000.1	Wheat	cytosol	46.92	45.89
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	50.95	44.48
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	51.29	44.42
Solyc02g036390.1.1	Tomato	cytosol	38.3	43.57
VIT_04s0079g00290.t01	Wine grape	cytosol	48.82	43.38
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	50.95	43.25
TraesCS6D01G241800.1	Wheat	cytosol	51.29	43.17
TraesCS6B01G288400.1	Wheat	cytosol	51.51	43.11
HORVU6Hr1G066460.5	Barley	cytosol	51.18	42.83
Os04t0583700-00	Rice	cytosol	48.94	42.26
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	49.94	41.57
KXG26989	Sorghum	cytosol	49.5	41.42
Zm00001d051479_P005	Maize	nucleus	49.27	40.89
KRG98005	Soybean	cytosol	48.82	40.75
CDY31624	Canola	cytosol	44.79	40.69
PGSC0003DMT400043094	Potato	nucleus	48.94	40.61
AT1G65920.1	Thale cress	cytosol	45.69	40.56
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	50.28	40.45
KRH30884	Soybean	cytosol	48.6	40.41
Bra038181.1-P	Field mustard	cytosol	44.68	39.82
CDX87989	Canola	cytosol	44.46	39.62
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	50.39	38.96
GSMUA_Achr4P00510_001	Banana	cytosol	40.09	37.25
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	38.86	37.11
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	39.08	35.36
GSMUA_Achr5P08220_001	Banana	cytosol	42.89	34.82
GSMUA_Achr8P07850_001	Banana	cytosol	40.31	32.58
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	33.82	30.85
GSMUA_AchrUn_...	Banana	nucleus	39.64	30.7
GSMUA_Achr6P17690_001	Banana	cytosol	14.67	29.84
GSMUA_Achr3P19000_001	Banana	nucleus	14.22	28.29
GSMUA_Achr7P20980_001	Banana	cytosol	40.65	24.98
GSMUA_Achr10P...	Banana	mitochondrion	11.09	23.57
GSMUA_Achr8P06920_001	Banana	cytosol	8.62	23.55
GSMUA_Achr6P29750_001	Banana	cytosol	9.97	22.42
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.09	21.95
GSMUA_Achr10P...	Banana	cytosol	11.76	21.74
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.87	21.54
Solyc02g081250.1.1	Tomato	cytosol	48.71	20.84
GSMUA_Achr9P15560_001	Banana	cytosol	8.62	20.7
GSMUA_Achr5P12060_001	Banana	mitochondrion	10.41	20.58
GSMUA_AchrUn_...	Banana	cytosol, plastid	12.21	20.3
GSMUA_Achr9P02110_001	Banana	plastid	11.98	19.89
GSMUA_AchrUn_...	Banana	cytosol	11.09	18.57

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:Brevis_radix_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G02140_001	EnsemblPlants:GSMUA_Achr1P02140_001	EnsemblPlants:GSMUA_Achr1T02140_001
InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	UniProt:M0RWC2	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF16457
InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002952102	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G02140_001]

Coordinates

chr1:-:1746148..1752056

Molecular Weight (calculated)

99352.0 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.430

Length

893 amino acids

Sequence
(BLAST)

001: MAENFERRTP SVREVEQAIT ALKKGAHLLK CGRRGKPKFC PFRISTDEKI LIWYSGEKEK HLNLDAVSKV ISGQQTVNFL RQNQADKKNQ SFSLVYENGQ
101: RSLDLICKDK EQAESWRLGL TALVSASHQP RILANIRSSR WAHTCANSPV GYIATNHKLG LLQDRMMNTS DEFYSPRQRT LSDIQSYLDK ILPRLPHVVS
201: YGEKEKKDSN LSKGQRMFPI SKLSSSEHES PKIYVNDGLK DAFMWGKGVG GVDFSLPKLL DSTRALDVRS VSCGEKHAAL VTKQGEVFCW GLENGGRLGH
301: KVNMDAPYPK LVEISGPLDG VFISRIACGE WHTAIVSSSG QLFTCGDGTF GVLGHGDVQS ISQPKEVESL KGLRVKSVAC GPWHTAAVVE IVVGHVKSNS
401: PGGKLFTWGD NDKGRLGHVD KDRKLAPTCV ASLVDCDFVQ VSCGTTLTAA LTVTGITFTM GSSANGQLGN PHAEDVSIAR VEGLLKSEFV KEISAGSFHV
501: AVLTTKGKVY TWGRGGNGQL GLGDNKDRSS PTLVESLEDR HVESVACGSN FTIVTCLHKF ISSKDQLICT GCRMVFGFAR KKHNCYNCGF MFCHPCSSNK
601: VMNAALAPNK CKKYRVCNTC FTQLQKISDP RINMEISTPR PLLLTTEGYS DLRLKREHSF ITEGKTFYLI ANQRWGHVPC PQQFIEHGRE NSLKVVPISG
701: QDSLRKDLDN VDKIVREELL RLQTEAKSLT QKCQSKSRKL QQCKRKIEET WLLAKDEAEK CKAANAVIKI LTAQINALTE KLSTRRQVSN IGSTVDANST
801: CCPAQTKFLR PEDAKNCRTK ESKDEQVEQV EVGVYVTFIT LPSGQKGLNR VRFSRKHFSE KEAEIWWEEN QRRVYSKYNI KSFVTPSTGK IDH

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.