Factsheet for GSMUA_Achr10P25570_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G016430.4	Barley	cytosol	62.86	66.5
Os11t0545800-01	Rice	mitochondrion	65.24	64.47
TraesCS1A01G076400.1	Wheat	mitochondrion	64.29	64.44
TraesCS1D01G078800.1	Wheat	mitochondrion	63.81	63.96
EES09892	Sorghum	mitochondrion	63.57	63.88
KRH63955	Soybean	mitochondrion	60.71	61.15
VIT_07s0031g02850.t01	Wine grape	mitochondrion	60.95	60.95
KRH53977	Soybean	cytosol, mitochondrion, nucleus	45.0	59.06
Solyc05g056590.2.1	Tomato	cytosol	37.86	57.82
CDY44785	Canola	mitochondrion	58.81	57.04
Bra028647.1-P	Field mustard	mitochondrion	58.57	56.29
CDY40735	Canola	mitochondrion	58.57	56.29
AT5G08710.1	Thale cress	mitochondrion	57.86	55.99
Zm00001d052624_P007	Maize	plastid	60.0	55.02
GSMUA_Achr6P29750_001	Banana	cytosol	25.0	26.45
GSMUA_Achr6P17690_001	Banana	cytosol	27.14	25.97
GSMUA_Achr9P15560_001	Banana	cytosol	22.38	25.27
GSMUA_Achr3P19000_001	Banana	nucleus	26.67	24.94
GSMUA_Achr10P...	Banana	cytosol	25.24	21.95
GSMUA_Achr8P06920_001	Banana	cytosol	16.67	21.41
GSMUA_Achr5P12060_001	Banana	mitochondrion	19.05	17.7
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.48	17.48
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.29	16.46
GSMUA_Achr9P02110_001	Banana	plastid	20.48	15.99
GSMUA_AchrUn_...	Banana	cytosol, plastid	20.24	15.83
GSMUA_AchrUn_...	Banana	cytosol	19.76	15.57
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	28.57	12.83
GSMUA_Achr5P08220_001	Banana	cytosol	30.95	11.82
GSMUA_Achr1P02140_001	Banana	cytosol	23.57	11.09
GSMUA_AchrUn_...	Banana	nucleus	29.76	10.84
GSMUA_Achr8P07850_001	Banana	cytosol	28.1	10.68
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	23.81	10.21
GSMUA_Achr5P11650_001	Banana	cytosol	23.57	10.21
GSMUA_Achr4P00510_001	Banana	cytosol	23.33	10.2
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	23.81	10.13
GSMUA_Achr7P20980_001	Banana	cytosol	23.57	6.81

Protein Annotations

EnsemblPlants:GSMUA_Achr10P25570_001	EnsemblPlants:GSMUA_Achr10T25570_001	EnsemblPlantsGene:GSMUA_Achr10G25570_001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000295C44D	UniProt:M0RLD1
MapMan:35.1	:	:	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25570_001]

Coordinates

chr10:+:29514924..29528040

Molecular Weight (calculated)

44597.7 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.135

Length

420 amino acids

Sequence
(BLAST)

001: MASALCRRAL LRACGGKPPR FLSPSRRFSG EAPRRFAALW GNGDYGRLGL GGLESRWKPT VCPFFDDDPP VSIACGGAHT LFLTECGRVY ASGLNNFGQL
101: GRSSATPFAL EPAEVSGLPE NIRQISAGYH HSAAVTADGE LFIWGNNSSG QLGLGKSTKS IVYLPTRVDF LVGINIKMVA LGSEHSIAIT DVGDALSWGA
201: GDSGRLGHGH KSSLFGFSVS SSEYTPRLIK SLEGVKIKTV AAGMLHSACI DEKGSVFIFG ERSTNKLEIG EGKNIRTPTV VQEIPDSEEV ACGGYHTCIV
301: TSGGELYTWG SNENGCLGLG CTEMIRNPEI VQSSFLKSPI SKVACGWKHT AVISGGNIFT WGWGGANGTF FEDGHSSGGQ LGHGDDNDCN VPKMVNFDQR
401: VKALQVSCGF NHTGGIFEYD

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.