Factsheet for GSMUA_AchrUn_randomP20200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, plastid	55.35	54.93
GSMUA_Achr9P02110_001	Banana	plastid	55.16	54.65
TraesCS2D01G340500.1	Wheat	cytosol	42.4	51.6
HORVU2Hr1G083590.1	Barley	cytosol	43.53	51.56
Os02t0597000-01	Rice	cytosol	51.03	50.65
TraesCS2B01G360200.1	Wheat	cytosol	51.22	50.18
EES07101	Sorghum	cytosol, plastid	49.53	49.35
EES12399	Sorghum	cytosol, plastid	47.09	47.45
KXG26580	Sorghum	cytosol	47.65	47.3
Zm00001d050985_P002	Maize	cytosol	48.78	46.76
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.2	26.22
GSMUA_Achr5P12060_001	Banana	mitochondrion	21.58	25.44
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.08	25.0
GSMUA_Achr9P15560_001	Banana	cytosol	15.95	22.85
GSMUA_Achr6P17690_001	Banana	cytosol	17.82	21.64
GSMUA_Achr3P19000_001	Banana	nucleus	17.64	20.94
GSMUA_Achr10P...	Banana	mitochondrion	15.57	19.76
GSMUA_Achr10P...	Banana	cytosol	17.64	19.46
GSMUA_Achr8P06920_001	Banana	cytosol	11.44	18.65
GSMUA_Achr6P29750_001	Banana	cytosol	13.88	18.64
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	21.01	11.98
GSMUA_Achr8P07850_001	Banana	cytosol	24.39	11.76
GSMUA_AchrUn_...	Banana	nucleus	24.2	11.19
GSMUA_Achr1P02140_001	Banana	cytosol	18.57	11.09
GSMUA_Achr5P08220_001	Banana	cytosol	22.7	11.0
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	19.89	10.74
GSMUA_Achr5P11650_001	Banana	cytosol	19.32	10.62
GSMUA_Achr4P00510_001	Banana	cytosol	18.95	10.51
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	18.2	9.91
GSMUA_Achr7P20980_001	Banana	cytosol	19.51	7.16

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	ncoils:Coil	EnsemblPlantsGene:GSMUA_AchrUn_randomG20200_001	EnsemblPlants:GSMUA_AchrUn_randomP20200_001	EnsemblPlants:GSMUA_AchrUn_randomT20200_001
InterPro:IPR000408	InterPro:IPR009091	UniProt:M0UAS9	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI0002956026	SEG:seg	:	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20200_001]

Coordinates

chrchrUn_random:-:97962633..97965825

Molecular Weight (calculated)

57553.8 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.073

Length

533 amino acids

Sequence
(BLAST)

001: MDASTATATE TSSPVRFDLR EHPLSIVFPG LHETVQRRCF NHSNSGICLL FMNSSVALHV LSSYGLEPDD LARLEASATC SFFRQHGGLP PDERLPLTEL
101: AAFDMCRRRV ALASMAAAEE EALKQRCGGS YKLLLKYLLA GERACDRREK FQVVAGPGFS IAVTSNGEVH TFGHNHSGQL GHGTLSNEEM PRLIRSLQGV
201: RIVQAAAGAE RTLLVTDAGR VYQCGKNYFG IPILSNSTFD SIKTPVLLES LKDIFVVQAT IGHFLTAILS REGRVYTLSW GVDGRLGHDT DATDRTPRLL
301: SGVLEDKPVV QIAAGNCYLL ALAFQPNGMC VYSLGCGLGG KLSHGSTDDE HHPRLIAHFA ILNLQPIALS AGSWHAIALG KDGRVCTWGW GYNGCLGHGD
401: EDYQNLPKVV KGLSHVKAVH VAAGLCTTFV ITENGDIYSF GRGSDSNLGY PPQYGHRLDQ LTPKLVTSLT CAGEKIIRLS ATKEHEAAGH TFAMTESGKL
501: YAFGMAIYGQ LGIKLLQGQD GTSSPQRVDI DLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.