Factsheet for GSMUA_Achr5P08220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	73.64	86.63
Os05t0384800-01	Rice	cytosol	76.73	77.72
VIT_06s0009g03550.t01	Wine grape	nucleus	77.73	77.24
Zm00001d042074_P001	Maize	cytosol	76.55	77.18
TraesCS1A01G240600.2	Wheat	cytosol	76.73	76.94
TraesCS1D01G240700.1	Wheat	cytosol	76.27	76.76
HORVU0Hr1G028990.2	Barley	cytosol	27.45	76.65
TraesCS1B01G252700.2	Wheat	cytosol	76.27	76.62
KXG34127	Sorghum	cytosol	64.09	76.46
KRH73555	Soybean	nucleus	76.91	76.35
KRH14571	Soybean	nucleus	76.55	76.06
KRG99075	Soybean	nucleus	76.0	75.59
Solyc11g065120.1.1	Tomato	cytosol	77.55	75.55
KRH45937	Soybean	nucleus	75.45	74.84
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	76.45	74.76
Zm00001d011851_P001	Maize	cytosol	75.91	74.69
Solyc12g099740.1.1	Tomato	nucleus	69.18	74.24
TraesCS3B01G543500.1	Wheat	cytosol	73.45	74.2
TraesCS3D01G489600.1	Wheat	cytosol	73.36	74.1
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	73.91	74.04
Bra008895.1-P	Field mustard	nucleus	71.09	73.5
AT5G12350.1	Thale cress	nucleus	71.73	73.4
CDX69686	Canola	nucleus	71.09	73.08
CDX85690	Canola	nucleus	71.0	72.99
CDX91165	Canola	nucleus	71.09	72.88
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	72.73	72.79
CDX97187	Canola	nucleus	69.91	72.68
Os01t0952300-00	Rice	cytosol	74.64	71.83
Bra006504.1-P	Field mustard	cytosol	70.91	70.72
CDX92532	Canola	nucleus	71.18	70.29
Bra023374.1-P	Field mustard	nucleus	71.0	70.23
AT5G19420.2	Thale cress	mitochondrion	72.36	69.89
CDY13998	Canola	nucleus	70.36	69.35
CDX88891	Canola	cytosol, mitochondrion, nucleus	71.09	68.9
Bra002235.1-P	Field mustard	nucleus	69.55	68.67
CDX70876	Canola	cytosol	69.45	68.52
GSMUA_Achr4P00510_001	Banana	cytosol	51.45	58.9
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	44.09	49.14
GSMUA_Achr8P07850_001	Banana	cytosol	49.27	49.05
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	39.27	44.13
GSMUA_AchrUn_...	Banana	nucleus	46.0	43.89
GSMUA_Achr1P02140_001	Banana	cytosol	34.82	42.89
GSMUA_Achr5P11650_001	Banana	cytosol	35.73	40.52
GSMUA_Achr7P20980_001	Banana	cytosol	52.36	39.64
GSMUA_Achr6P17690_001	Banana	cytosol	15.0	37.59
GSMUA_Achr3P19000_001	Banana	nucleus	14.64	35.86
GSMUA_Achr10P...	Banana	mitochondrion	11.82	30.95
GSMUA_Achr8P06920_001	Banana	cytosol	8.91	29.97
GSMUA_Achr5P12060_001	Banana	mitochondrion	12.18	29.65
GSMUA_Achr9P15560_001	Banana	cytosol	9.82	29.03
GSMUA_Achr6P29750_001	Banana	cytosol	10.45	28.97
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.82	28.66
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.36	27.64
GSMUA_Achr10P...	Banana	cytosol	11.82	26.92
GSMUA_Achr9P02110_001	Banana	plastid	12.09	24.72
GSMUA_AchrUn_...	Banana	cytosol, plastid	11.73	24.02
GSMUA_AchrUn_...	Banana	cytosol	11.0	22.7

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G08220_001	EnsemblPlants:GSMUA_Achr5P08220_001
EnsemblPlants:GSMUA_Achr5T08220_001	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	UniProt:M0SWQ1	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713
PFAM:PF16627	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF212	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000294A5C3	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G08220_001]

Coordinates

chr5:-:5945975..5956339

Molecular Weight (calculated)

118539.0 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.420

Length

1100 amino acids

Sequence
(BLAST)

0001: MAAASAAADH GRTGHAERDI EQAITALKKG AYLLKYGRRG KPKFCPFRLS NDESTLIWFS GKEEKHLKLS HVSRIMPGQR TAIFQRYPQP EKECQSFSLI
0101: YSDRSLDLIC KDKDEAEVWF AGLKTLIPRS HHRSWRTESR SDGASSGTNS PRTYTRRSSP LNSPFGSSDS MQKDGSDTFR VRSPYGSPTK NGLDKSFSEV
0201: VSYAVPPKSF FPSDSATGSL HSLSSGCSDN INGHARAIAT DAFRVSLSSA VSSSSQGSGH DDGDALGDVF IWGEGTGDGV LGGGSLRLGS YSGIKLDSLA
0301: PKALESAVIL DVQNISCGGR HAALVTKQGE IYSWGEESGG RLGHGVDADV SQPKLIDALV NMNIELVACG EHHTCAVTLS GDLYTWGDGT STLGLLGHGN
0401: EMSNWIPKRV NGALEGIHVS SVSCGPWHTA VVTSAGQLFT FGDGTFGVLG HGDCKSVSVP REVESLRGLR TVRAACGVWH TAAVVEVMSG NSSSSNCSSG
0501: KLFTWGDGDK GRLGHGDKEN KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSA VYGQLGNPQA DGKLPMRVEG KLLKNFVEEI SCGAYHVAVL
0601: TSRTEVYTWG KGANGRLGHG DTDDRNSPTL VEALKDKQVR SVVCGTNFTA AICIHKWVSG VDQSMCSGCR LPFSFKRKRH NCYNCALVFC HYCSNKKSLR
0701: ASMAPNPHKP YRVCDNCFIK LSKPLESDSS LHSAASRRGN IIKGFTEMTE EDKLDPKSNV QIPRISSIES FKQIENRSSK KNKKFEFIGS RVSPIPNGTS
0801: RWGALNISKS FNPASGTSKK FFSASVPGSR IVSRATSPVS RRPSPPRSTT PTPTLGGLTS PRIILDNSKG GTDSISQEVL KLRAQVANLA RKAQLQEVEL
0901: ERATKQLKEA ISIAEEEAAK SKAAKEVIKS LTAQLKSMAE RLPIGAAENS KLPSLASLNT TPTSSGVSVA AVERLSSMLT SQETDANVSS CVLVSNGPSS
1001: TGSHNNGGTP VARNGSKVID ADPDRETEWV EQDEPGVYIT LTSLPGGVRD LKRVRFSRKR FSEKQAEQWW AENRARVYEQ YNVRMVDRST ISIRSDERSR

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.