CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69686	Canola	nucleus	96.79	95.7
CDX91165	Canola	nucleus	93.86	92.54
CDX85690	Canola	nucleus	93.57	92.52
AT5G12350.1	Thale cress	nucleus	93.86	92.37
CDX88891	Canola	cytosol, mitochondrion, nucleus	85.63	79.82
CDX70876	Canola	cytosol	84.12	79.82
CDX92532	Canola	nucleus	84.03	79.8
CDY13998	Canola	nucleus	84.03	79.66
KRH14571	Soybean	nucleus	80.06	76.51
KRH73555	Soybean	nucleus	79.58	75.99
VIT_06s0009g03550.t01	Wine grape	nucleus	79.21	75.7
KRG99075	Soybean	nucleus	77.98	74.59
Solyc11g065120.1.1	Tomato	cytosol	78.64	73.69
KRH45937	Soybean	nucleus	77.22	73.67
HORVU0Hr1G028990.2	Barley	cytosol	27.13	72.84
Solyc12g099740.1.1	Tomato	nucleus	69.85	72.1
GSMUA_Achr5P08220_001	Banana	cytosol	72.68	69.91
Zm00001d042074_P001	Maize	cytosol	71.83	69.66
TraesCS1D01G240700.1	Wheat	cytosol	71.46	69.17
Os05t0384800-01	Rice	cytosol	70.89	69.06
TraesCS1B01G252700.2	Wheat	cytosol	71.46	69.04
TraesCS1A01G240600.2	Wheat	cytosol	71.55	69.01
Zm00001d011851_P001	Maize	cytosol	71.93	68.07
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	60.02	67.91
KXG34127	Sorghum	cytosol	58.98	67.68
TraesCS3B01G543500.1	Wheat	cytosol	69.38	67.4
TraesCS3D01G489600.1	Wheat	cytosol	69.28	67.31
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	71.55	67.29
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	68.15	65.61
Os01t0952300-00	Rice	cytosol	69.57	64.39
CDY66504	Canola	cytosol	39.13	50.18
CDY47138	Canola	cytosol	49.53	50.05
CDY11586	Canola	cytosol	49.24	49.48
CDX88324	Canola	cytosol	48.68	48.54
CDX87557	Canola	cytosol	48.39	47.72
CDY48550	Canola	cytosol	43.67	47.14
CDX87986	Canola	cytosol	9.17	47.09
CDY70949	Canola	cytosol	15.69	46.89
CDY28580	Canola	plasma membrane	46.22	46.84
CDY44086	Canola	plasma membrane, vacuole	46.41	46.67
CDX77871	Canola	cytosol	39.79	44.36
CDX68076	Canola	cytosol	34.4	43.86
CDY21795	Canola	cytosol	39.6	43.78
CDX85076	Canola	cytosol	42.63	43.45
CDY12764	Canola	cytosol	42.53	42.94
CDX77534	Canola	cytosol	42.91	40.86
CDY49416	Canola	cytosol	42.63	40.3
CDY31624	Canola	cytosol	36.01	38.76
CDX87989	Canola	cytosol	35.73	37.72
CDY69131	Canola	cytosol	10.78	35.51
CDY31347	Canola	cytosol	14.56	35.32
CDY46423	Canola	cytosol	12.48	34.83
CDY43762	Canola	cytosol	13.99	34.58
CDX81201	Canola	cytosol	14.18	34.09
CDY60046	Canola	cytosol	14.37	33.93
CDY39843	Canola	cytosol	12.85	33.66
CDX84451	Canola	cytosol	14.08	33.41
CDY16215	Canola	cytosol	12.1	33.16
CDY44785	Canola	mitochondrion	12.57	30.72
CDY40735	Canola	mitochondrion	12.38	29.98
CDY34733	Canola	cytosol	9.36	29.55
CDY02190	Canola	mitochondrion	11.81	28.22
CDY51633	Canola	mitochondrion	11.81	28.15
CDX69479	Canola	cytosol	10.4	27.71
CDY43240	Canola	cytosol	12.29	27.54
CDY57523	Canola	cytosol	12.19	27.39
CDY26488	Canola	cytosol	10.3	27.39
CDY56827	Canola	cytosol	11.53	25.58
CDX97668	Canola	cytosol	11.53	25.58
CDX96062	Canola	plastid	12.29	25.1
CDY01845	Canola	plastid	12.19	24.95
CDY39172	Canola	cytosol	11.53	24.8
CDY04192	Canola	cytosol	11.53	24.8
CDY28863	Canola	cytosol	11.91	24.23
CDY13609	Canola	cytosol	12.1	24.2
CDY56518	Canola	cytosol, plastid	11.81	24.04
CDX83586	Canola	cytosol, plastid	11.91	23.82
CDX99731	Canola	cytosol, plastid	11.91	23.55
CDY40988	Canola	cytosol, plastid	11.53	22.22
CDY14709	Canola	nucleus	12.85	19.68
CDY20113	Canola	endoplasmic reticulum, extracellular	12.0	15.39
CDY21840	Canola	endoplasmic reticulum, extracellular	11.63	14.89

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078E818	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDX97187	ProteinID:CDX97187	ProteinID:CDX97187.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00104184001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI0004EE98D8	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC09g44380D

Coordinates

chrLK031897:+:1079794..1084241

Molecular Weight (calculated)

116221.0 Da

IEP (calculated)

9.396

GRAVY (calculated)

-0.506

Length

1058 amino acids

Sequence
(BLAST)

0001: MSRNGSMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGKEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FSGLKALISR YHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQRDGSNNL RIHSPFESPP QLDKALSEMA
0201: LYAVPTKGFY PSDSGTISVH SGGSDSMHGH MRGMGMDAFR VSICIGDVFI WGEGIGDGVL GGGNRRVGSS FDIKMDSLLP KALESTVVLD VQNIACGGQH
0301: AVLVTKQGES FSWGEESEGR LGHGVDSNIQ HPKLIDALNT TNIELVACGE FHSCAVTLSG DLYTWGKGDF GVLGHGNEVS HWVPKRVNFL LEGIHVSSIA
0401: CGPYHTAVVT SAGQLFTFGD GTFGVLGHGD RKSVFIPREV DSLKGLRTVR AACGVWHTAA IVEVMVGSSS SSNCSSGKLF TWGDGDKCRL GHGNKEPKLV
0501: PTCVAALVEP NFCQVACGHS LTVALTTSGQ VYTMGSPVYG QLGNSHADGK VPNRVEGKLH KNFVEEIACG AYHVAVLTWK TEVYTWGKGS NGRLGHGDVD
0601: DRNSPTLVES LKDKQVKSIA CGTNFTAAVC IHRWASGMDQ SMCSGCRQPF NFKRKRHNCY NCGLVFCHSC SNKKSLKACM APNPNKPYRV CDKCFTKLKK
0701: TMETDASSHS SLSRRGSINQ GSADPIDKDD KLDSRSDGQL ARFSLMDSMR QVDSRNKKNK KYEFSSSRVS PIPSRSSQRG ALNIAKTFNP VFGASKKFFS
0801: ASVPGSRIVS RATSPISRRP SPPRSTTPTP TLSGLTTPRI VVDDTKRTND NISQEVVKLR SQVESLTRKA QFQEVELERT AKQLKEALAI ANEETTRCTA
0901: AKEVIKSLTA QLKDMAERLP VGTARTVKSP PLSLNSFGSS PGRVDPFNIV NRPNGQEPEL NGVNTPMFSN GTTTPVFGNG EAKNEAENEK EWVEQDEPGV
1001: YITLTALAGG VRDLKRVRFS RKRFSEKQAE QWWADNRGRV YEQYNVRMVD KASEEMPR

Best Arabidopsis Sequence Match ( AT5G12350.1 )
(BLAST)

0001: MSRNGRMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGNEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K0X5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.