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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra023740.1-P Field mustard cytosol 99.52 77.02
CDX85076 Canola cytosol 90.55 71.97
AT3G23270.2 Thale cress cytosol 90.67 70.97
CDX77534 Canola cytosol 90.55 67.24
CDY12764 Canola cytosol 75.27 59.26
VIT_05s0049g01140.t01 Wine grape cytosol 72.24 56.17
CDY49416 Canola cytosol 74.42 54.87
CDY70949 Canola cytosol 22.67 52.82
Solyc03g005590.1.1 Tomato cytosol, plastid 68.24 52.57
PGSC0003DMT400034994 Potato cytosol 65.7 52.37
KRH00393 Soybean cytosol 64.48 49.77
CDX87986 Canola cytosol 12.12 48.54
KRH69117 Soybean cytosol 63.39 48.52
KRH31700 Soybean cytosol 62.79 48.05
Os01t0700200-01 Rice cytosol 60.24 47.61
EES19890 Sorghum cytosol 58.18 47.06
TraesCS1A01G366800.1 Wheat cytosol 59.39 46.93
HORVU1Hr1G078890.1 Barley cytosol 59.27 46.53
TraesCS1B01G384600.1 Wheat cytosol 59.15 46.52
TraesCS1D01G372300.1 Wheat cytosol 59.27 46.44
Os05t0545200-00 Rice cytosol 56.97 46.35
Zm00001d038882_P002 Maize cytosol 58.67 45.88
KRH40796 Soybean cytosol 41.45 45.6
Zm00001d011660_P003 Maize cytosol 57.94 45.22
CDY47138 Canola cytosol 56.85 44.79
EES01332 Sorghum cytosol 57.33 44.79
CDY11586 Canola cytosol 56.97 44.63
CDX88324 Canola cytosol 56.73 44.11
CDX87557 Canola cytosol 56.73 43.62
CDY48550 Canola cytosol 49.33 41.53
CDX69686 Canola nucleus 51.76 39.91
CDX85690 Canola nucleus 51.03 39.35
CDX91165 Canola nucleus 50.91 39.14
CDX97187 Canola nucleus 50.18 39.13
CDX68076 Canola cytosol 38.79 38.55
KRH65503 Soybean cytosol, mitochondrion, nucleus 47.64 37.57
CDX92532 Canola nucleus 50.06 37.07
CDY13998 Canola nucleus 50.06 37.01
CDX88891 Canola cytosol, mitochondrion, nucleus 50.42 36.65
CDX70876 Canola cytosol 48.97 36.23
CDX77871 Canola cytosol 40.48 35.19
CDY21795 Canola cytosol 40.73 35.11
CDY28580 Canola plasma membrane 44.0 34.77
CDY44086 Canola plasma membrane, vacuole 44.12 34.6
CDY69131 Canola cytosol 13.21 33.96
CDY46423 Canola cytosol 15.15 32.98
CDY16215 Canola cytosol 15.27 32.64
CDY43762 Canola cytosol 16.61 32.01
CDY31624 Canola cytosol 37.7 31.64
CDX84451 Canola cytosol 16.85 31.17
CDX87989 Canola cytosol 37.82 31.14
CDX81201 Canola cytosol 16.48 30.91
CDY60046 Canola cytosol 16.73 30.8
CDY31347 Canola cytosol 16.24 30.73
CDY39843 Canola cytosol 14.91 30.45
CDY34733 Canola cytosol 11.27 27.76
CDX69479 Canola cytosol 13.21 27.46
CDY44785 Canola mitochondrion 14.3 27.25
CDY26488 Canola cytosol 13.09 27.14
CDY40735 Canola mitochondrion 14.3 27.0
CDY56827 Canola cytosol 15.27 26.42
CDX97668 Canola cytosol 15.27 26.42
CDY02190 Canola mitochondrion 13.45 25.06
CDY51633 Canola mitochondrion 13.45 25.0
CDY39172 Canola cytosol 14.42 24.19
CDY43240 Canola cytosol 13.82 24.15
CDY57523 Canola cytosol 13.7 23.99
CDY04192 Canola cytosol 14.3 23.98
CDX96062 Canola plastid 14.79 23.55
CDY01845 Canola plastid 14.55 23.21
CDX99731 Canola cytosol, plastid 15.03 23.18
CDY13609 Canola cytosol 14.67 22.87
CDX83586 Canola cytosol, plastid 14.55 22.68
CDY56518 Canola cytosol, plastid 14.06 22.31
CDY28863 Canola cytosol 14.06 22.31
CDY40988 Canola cytosol, plastid 14.55 21.86
CDY14709 Canola nucleus 15.64 18.67
CDY20113 Canola endoplasmic reticulum, extracellular 15.15 15.15
CDY21840 Canola endoplasmic reticulum, extracellular 15.15 15.13
Protein Annotations
Gene3D:2.130.10.30Gene3D:2.30.29.30Gene3D:3.30.40.10MapMan:35.1GO:A0A078JIF8UniProt:A0A078JIF8
EnsemblPlants:CDY66504ProteinID:CDY66504ProteinID:CDY66504.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00054455001InterPro:IPR000408InterPro:IPR001849InterPro:IPR009091InterPro:IPR011993
InterPro:IPR013083InterPro:IPR017455PFAM:PF00415PFAM:PF01363PFAM:PF16457InterPro:PH-like_dom_sf
InterPro:PH_domainPRINTS:PR00633PFscan:PS50003PFscan:PS50012PFscan:PS50178PANTHER:PTHR22870
PANTHER:PTHR22870:SF87InterPro:RCC1/BLIP-IIInterPro:Reg_chr_condensSMART:SM00064SUPFAM:SSF50729SUPFAM:SSF50985
SUPFAM:SSF57903UniParc:UPI0004EE0C06InterPro:Znf_FYVEInterPro:Znf_FYVE-relInterPro:Znf_FYVE_PHDInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
BnaAnng22340DBnaAnng22340D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JIF8]
Coordinates
chrLK035298:+:14588..17717
Molecular Weight (calculated)
90150.1 Da
IEP (calculated)
9.284
GRAVY (calculated)
-0.373
Length
825 amino acids
Sequence
(BLAST)
001: MADPASYVYH ERDIDQALII LKKGTQLVKY SRKGKPKFRA FRLSPDDKTL IWFSHGEEKG LKLSEVSRIV PGQRTAVFKR FLRPEKDHLS FSLLYNNKER
101: SLDLICKDKA ETEVWFAALK YIIERSRNRR ARSEIPEIHD SDYFSTGRQS IDIVSNNIPR GRTSIDLGYE RGNMLRPSTD GFRISVSSTP SCSSGGSGPD
201: DIESLGDVYV WGEVWSEGIL PDGTVSKETV KTDVLTPRPL ESNVVLDVHQ IVCGVRHVAL VTRQGEVFTW GEEAGGRLGH GIQVDICRPK LVEFLALTNI
301: DFVACGEYHT CVVSTSGDLF SWGDGIHNVG LLGHGSDISH WIPKRVSGPL EGLQVLSVAC GTWHSALATA NGKLFTFGDG AFGVLGHGDR ESVSNPKEVQ
401: SLNGLKTVKV ACSIWHTAAI VEVMGQTGTS MSSRKLFTWG DGDKNRLGHG NKETYLLPTC VSSLIDYNFH QIACGHTFTV ALTTSGHVFT MGGSSHGQLG
501: NSISDGKVPC LVQDRLVGEF VEEIACGDHH VAVLTSRSEV FTWGKGANGR LGHGDTEDRR TPTLVEALKD RHVKSLSCGS NFTSSICIHK WVSGADQSIC
601: SGCRQAFGFT RKRHNCYNCG LVHCHACSSK KALKAALAPT PGKPHRVCDA CYNKLKAAET GYITNANRNN VATPGRSSID GSVRIDRETT RSSKILLSGN
701: TKSVKTSRPG FRPNSSNVRD SQVPSLQQLK DIAFPSLLKP IAPAAVPQRL LVGPMSSPPP TRSSSPLPGR SSSPYARRSS PPRTSGFSRS VIDSLKKTNE
801: VMNQEMTKLQ SQVKNLKEKC NNQRT
Best Arabidopsis Sequence Match ( AT3G23270.2 )
(BLAST)
0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.