CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40796	Soybean	cytosol	40.34	56.27
KRH00393	Soybean	cytosol	49.04	47.99
CDY66504	Canola	cytosol	37.57	47.64
VIT_05s0049g01140.t01	Wine grape	cytosol	47.42	46.75
KRH69117	Soybean	cytosol	47.23	45.83
PGSC0003DMT400034994	Potato	cytosol	45.22	45.7
KRH31700	Soybean	cytosol	47.04	45.64
Solyc03g005590.1.1	Tomato	cytosol, plastid	45.79	44.72
CDX85076	Canola	cytosol	43.5	43.83
AT3G23270.2	Thale cress	cytosol	44.07	43.74
Os05t0545200-00	Rice	cytosol	41.4	42.7
CDY12764	Canola	cytosol	42.73	42.65
Bra023740.1-P	Field mustard	cytosol	43.4	42.59
CDX77534	Canola	cytosol	43.79	41.22
KRH08750	Soybean	cytosol	24.95	40.97
EES19890	Sorghum	cytosol	39.67	40.69
AT4G14368.1	Thale cress	cytosol	42.64	40.33
CDY49416	Canola	cytosol	43.02	40.21
TraesCS1A01G366800.1	Wheat	cytosol	39.87	39.94
Zm00001d038882_P002	Maize	cytosol	40.25	39.91
KRH08736	Soybean	endoplasmic reticulum	26.48	39.74
TraesCS1D01G372300.1	Wheat	cytosol	39.77	39.51
TraesCS1B01G384600.1	Wheat	cytosol	39.48	39.37
Os01t0700200-01	Rice	cytosol	39.29	39.37
HORVU1Hr1G078890.1	Barley	cytosol	39.48	39.3
KRH30228	Soybean	cytosol	15.2	39.07
EES01332	Sorghum	cytosol	39.39	39.02
Zm00001d011660_P003	Maize	cytosol	39.29	38.88
KRG91629	Soybean	cytosol	40.06	38.16
KRH35179	Soybean	cytosol	40.06	37.41
KRH70333	Soybean	cytosol	39.77	37.14
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	43.79	36.06
KRH30227	Soybean	cytosol	15.2	35.26
KRH73555	Soybean	nucleus	35.28	33.3
KRH45937	Soybean	nucleus	35.28	33.27
KRG99075	Soybean	nucleus	35.18	33.27
KRH14571	Soybean	nucleus	35.18	33.24
KRH45886	Soybean	nucleus	30.11	33.09
KRG99112	Soybean	cytosol	30.69	32.76
KRH53977	Soybean	cytosol, mitochondrion, nucleus	8.51	27.81
KRH59606	Soybean	cytosol	11.57	27.69
KRH40960	Soybean	cytosol	8.89	27.51
KRH63955	Soybean	mitochondrion	10.8	27.1
KRH53944	Soybean	plastid	12.05	26.58
KRH63996	Soybean	nucleus	12.05	26.14
KRG98005	Soybean	cytosol	26.0	25.42
KRH30884	Soybean	cytosol	26.1	25.42
KRG93861	Soybean	nucleus	9.46	25.06
KRH46563	Soybean	mitochondrion	10.52	24.77
KRH45102	Soybean	cytosol, nucleus, peroxisome	11.19	24.68
KRH22127	Soybean	cytosol	11.28	24.33
KRH01383	Soybean	cytosol	10.8	23.84
KRH27216	Soybean	cytosol	11.38	23.56
KRH49501	Soybean	cytosol	3.44	20.81
KRH74759	Soybean	nucleus	10.99	20.43
KRG97505	Soybean	cytosol	10.13	19.81
KRH31377	Soybean	cytosol	9.85	19.4
KRH69375	Soybean	nucleus	10.9	19.29
KRH59226	Soybean	cytosol	9.85	19.29

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02001360	InterPro:Brevis_radix_dom	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G040800	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR013083	InterPro:IPR013591	UniProt:K7KCR2	EnsemblPlants:KRH65503	ProteinID:KRH65503	ProteinID:KRH65503.1
PFAM:PF00415	PFAM:PF08381	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI00023BC68F	InterPro:Znf_FYVE	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:5149644..5155590

Molecular Weight (calculated)

115310.0 Da

IEP (calculated)

7.262

GRAVY (calculated)

-0.547

Length

1046 amino acids

Sequence
(BLAST)

0001: MQPRASVGDG FRVSASSTPS NSSGGSEPDD IDSFHAVYIW GEVLANGVSP DGIGTQIPSK TDVLIPKALE SNVLDVCHIA TGAHHIAIAT RQGHVFTWGQ
0101: ESGGRLGHGI DKDFSSPVLV EFLEGNNFEF VACGEYHTSA LSKSFELYTW GDGTHNVGLL GHGSEASHWI PKMVNGPLEG LQVVSIACGT WHSALATSNG
0201: KLFTFGDGAF GVLGHGDQES VWYPKEVQLL TGLKTIKVAC GVWHTAAIIE VAFQSGSNSS SWKLFTWGDG DMHRLGHGNK ETYLQPTRVA PLMEYNFHQV
0301: ECGHNMTIAL TTSGHVFTMG GTEHGQLGNP MSLGKIPTLV QDKLLGEFVE KISCGAHHVA ILTNKSEIYT WGMGANGRLG HGDVEDRKSP TLVVALKDRN
0401: IKNVSCGSNF TSCICVHKWV SETDQSIYNG FRQAFGLTKK RHNCHNCGLA CSSKKTLKAT TLTPTPEKPH RVCDNCNVKL KVVNDNGASK LDRKVTPSHH
0501: SINGNERLGQ GTIRSTRTLL SPITEPIKYL EIKNSNPKNK FDSTSFIRAS QVPSHVQLKD IAFPSSLSSS QSVLKSTIPL ASPPRTPPPH TNSGPIFTNT
0601: RKQSPTRLAS PRYFGSLNNN LRRTNDALNQ EVSKLQNQIQ SLKQRSDMQD VEIKKLNKKV VEAIAFSAVE SSNHGVTKEF FESTVYQLKE ITEKLPQKIP
0701: ESKTLRIVLT QAEDFLKGIV ESKTSSSSKL ESKQPNAPDI PNLNNGSSNL QKNRVEENVD IAGVNPCQDE GKFLEESNIS NLQPKKQNAL DIATLDGVCS
0801: KLQKQRIQEN MEANGANPCH DEESFLEESN KSKLDYRKQN IPTSDTSTSK MREHKLDKNV DDVELDSCQD REILLEESSE TNLDIKYQNA PNMLASISDV
0901: SEFQDDKLEE NVEVARVDPS QAEGHIPQEC NGSFASSVCK IMPSQNSYND SRSMDTSRLG KQGEIQVIEK FERGVYVILM LQSDGTKIFK RVKFSKRRFT
1001: ENQAEEWWNQ NKSRVLREYC PTHKKLTVGP SNVTSQVKEM IESSPK

Best Arabidopsis Sequence Match ( AT3G23270.1 )
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTRFLR PEKDHLSFSL LYNNRERSLD
0101: LICKDKAETE VWFAALKFLI EKSRNRRARS EIPEIHDSDT FSVGRQSIDF VPSNIPRGRT SIDLGYQNNS DVGYERGNML RPSTDGFRIS VSSTPSCSSG
0201: GSGPDDIESL GDVYVWGEVW TEGILPDGTA SNETVKTDVL TPRPLESNVV LDVHQIVCGV RHVALVTRQG EVFTWGEEVG GRLGHGIQVD ISRPKLVEFL
0301: ALTNIDFVAC GEYHTCVVST SGDLFSWGDG IHNVGLLGHG SDISHWIPKR VSGPLEGLQV LSVACGTWHS ALATANGKLF TFGDGAFGVL GHGNRESVSY
0401: PKEVQSLNGL KTVKVACSIW HTAAIVEVMG QTATSMSSRK LFTWGDGDKN RLGHGNKETY LLPTCVSSLI DYNFHKIACG HTFTVALTTS GHVFTMGGTA
0501: HGQLGNSISD GKLPCLVQDR LVGEFVEEIA CGAHHVAVLT SRSEVFTWGK GANGRLGHGD TEDKRTPTLV EALRDRHVKS LSCGSNFTSS ICIHKWVSGA
0601: DQSICSGCRQ AFGFTRKRHN CYNCGLVHCH ACSSKKALKA ALAPTPGKPH RVCDACYSKL KAAESGYSSN VNRNVATPGR SIDGSVRTDR ETTRSSKVLL
0701: SANKNSVMSS SRPGFTPESS NARASQVPSL QQLKDIAFPS SLSAIQNAFK PVVAPTTTPP RTLVIGPSSP SPPPPPRSSS PYARRPSPPR TSGFSRSVID
0801: SLRKTNEVMN QEMTKLHSQQ RCNNQGTEIE RFQKAAKDAS ELAARQSSKH KAATEALKSV AEQLKELKEK LPPEVSESEA FESINSQAEA YLNANKVSET
0901: SPLTTSGQEQ ETYQKTEEQV PSNSSITETS SSSRAPSTEA SSSRISGKES KEQFEPGVYV TYEVDMNGNK IFRRVRFSKK RFDEHQAEDW WTKNKDRLLK
1001: CYSSNSSSSS SSSNPTASDS PVAPQPPSDP SVPEQSNEKE PDSET

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.