CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g03240.t01	Wine grape	cytosol	85.32	85.32
Solyc02g085780.2.1	Tomato	cytosol	81.77	82.82
PGSC0003DMT400032945	Potato	extracellular	81.77	82.61
CDY34733	Canola	cytosol	69.87	82.39
AT3G02510.1	Thale cress	cytosol	81.77	82.19
AT5G16040.1	Thale cress	cytosol	82.28	82.07
Bra008654.1-P	Field mustard	cytosol	82.28	81.86
CDX69479	Canola	cytosol	82.03	81.61
CDY26488	Canola	cytosol	81.77	81.16
Bra021435.1-P	Field mustard	cytosol	80.51	81.12
GSMUA_Achr9P15560_001	Banana	cytosol	76.2	80.91
Zm00001d050380_P004	Maize	cytosol	78.23	79.43
TraesCS7D01G282600.1	Wheat	cytosol	75.7	79.31
KXG25196	Sorghum	cytosol	77.72	78.52
TraesCS7B01G200200.1	Wheat	cytosol	76.71	77.89
TraesCS7A01G284800.1	Wheat	cytosol	76.46	75.69
Zm00001d032229_P002	Maize	mitochondrion	77.72	73.27
HORVU7Hr1G062090.6	Barley	cytosol	75.95	72.46
KRH63955	Soybean	mitochondrion	24.81	23.5
KRH59606	Soybean	cytosol	24.56	22.2
KRH53977	Soybean	cytosol, mitochondrion, nucleus	17.47	21.56
KRH53944	Soybean	plastid	25.57	21.31
KRH63996	Soybean	nucleus	25.57	20.95
KRH45102	Soybean	cytosol, nucleus, peroxisome	25.06	20.89
KRH01383	Soybean	cytosol	24.81	20.68
KRH40960	Soybean	cytosol	17.22	20.12
KRH46563	Soybean	mitochondrion	22.28	19.82
KRH22127	Soybean	cytosol	23.8	19.38
KRG97505	Soybean	cytosol	25.57	18.88
KRH31377	Soybean	cytosol	25.06	18.64
KRH27216	Soybean	cytosol	23.8	18.61
KRH59226	Soybean	cytosol	23.8	17.6
KRH74759	Soybean	nucleus	25.06	17.58
KRH49501	Soybean	cytosol	7.59	17.34
KRH08750	Soybean	cytosol	27.85	17.27
KRH69375	Soybean	nucleus	25.32	16.92
KRH30228	Soybean	cytosol	12.66	12.29
KRH45886	Soybean	nucleus	28.1	11.66
KRH40796	Soybean	cytosol	20.25	10.67
KRG99112	Soybean	cytosol	26.33	10.61
KRH73555	Soybean	nucleus	28.61	10.2
KRH14571	Soybean	nucleus	28.35	10.12
KRH70333	Soybean	cytosol	28.61	10.09
KRG99075	Soybean	nucleus	28.1	10.04
KRG91629	Soybean	cytosol	27.85	10.02
KRH45937	Soybean	nucleus	28.1	10.01
KRH35179	Soybean	cytosol	28.1	9.91
KRH69117	Soybean	cytosol	26.08	9.55
KRH65503	Soybean	cytosol, mitochondrion, nucleus	25.06	9.46
KRH30884	Soybean	cytosol	25.57	9.4
KRH31700	Soybean	cytosol	25.57	9.37
KRH00393	Soybean	cytosol	25.32	9.35
KRG98005	Soybean	cytosol	25.32	9.35
KRH08736	Soybean	endoplasmic reticulum	16.2	9.18
KRH30227	Soybean	cytosol	6.58	5.76
Os02t0684900-01	Rice	cytosol	0.51	0.46
Os09t0560500-01	Rice	mitochondrion, plastid	0.0	0.0

Protein Annotations

EMBL:ACUP02011635	EnsemblPlants:KRG93861	EnsemblPlantsGene:GLYMA_19G046100	EntrezGene:100779559	Gene3D:2.130.10.30	InterPro:IPR000408
InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF206	PFAM:PF00415
PFscan:PS50012	PRINTS:PR00633	ProteinID:KRG93861	ProteinID:KRG93861.1	ScanProsite:PS00626	SUPFAM:SSF50985
UniParc:UPI0001D841A9	UniProt:I1N6P9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:6972618..6982502

Molecular Weight (calculated)

42676.1 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.470

Length

395 amino acids

Sequence
(BLAST)

001: MDSHSHIIAW GSGEDGQLGI GSNEEKEWVC LVKALQPHRI RSVVAGSRNS LAIADDGKLF TWGWNQRATL GHPAETKSEN KTENTPSQVK ALSSVKIVQA
101: AIGGWHCLAV DDQGRAYAWG GNEYGQCGEE PERKDGTGRP LRRDIEIPQR CAPKLVVRQV AAGGTHSVVL TREGHVWTWG QPWPPGDIKQ ISVPVRVQGL
201: ENVRLIAVGA FHNLALQEDG TLWAWGNNEY GQLGTGDTQP RSQPIRVQGL SDLTLVDIAA GGWHSTALTD EGEVYGWGRG EHGRLGFGDS DKSSKMVPQK
301: VQLLAGEDIV QVSCGGTHSV ALTRDGHMFS FGRGDHGRLG YGRKVTTGQP MEVPIDLPPP QDPSGTATEG HWIAKLVACG GRHTLAIVEW KSNES

Best Arabidopsis Sequence Match ( AT5G16040.1 )
(BLAST)

001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE

Arabidopsis Description

At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.