Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69479 | Canola | cytosol | 93.69 | 93.45 |
| Bra008654.1-P | Field mustard | cytosol | 93.69 | 93.45 |
| CDY26488 | Canola | cytosol | 93.43 | 92.96 |
| AT3G02510.1 | Thale cress | cytosol | 87.88 | 88.55 |
| KRG93861 | Soybean | nucleus | 82.07 | 82.28 |
| PGSC0003DMT400032945 | Potato | extracellular | 79.55 | 80.56 |
| Solyc02g085780.2.1 | Tomato | cytosol | 79.29 | 80.51 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 79.29 | 79.49 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 73.74 | 78.49 |
| Zm00001d050380_P004 | Maize | cytosol | 76.52 | 77.89 |
| KXG25196 | Sorghum | cytosol | 76.01 | 76.98 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 72.47 | 76.13 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 73.48 | 74.81 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 73.74 | 73.18 |
| Zm00001d032229_P002 | Maize | mitochondrion | 75.76 | 71.6 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 73.48 | 70.29 |
| AT1G27060.1 | Thale cress | cytosol | 25.51 | 26.17 |
| AT5G08710.1 | Thale cress | mitochondrion | 26.26 | 23.96 |
| AT5G63860.1 | Thale cress | cytosol | 25.76 | 23.18 |
| AT5G60870.2 | Thale cress | mitochondrion | 24.49 | 21.46 |
| AT3G02300.2 | Thale cress | cytosol | 23.74 | 19.5 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 26.01 | 19.36 |
| AT3G15430.2 | Thale cress | cytosol | 23.48 | 19.06 |
| AT3G23270.2 | Thale cress | cytosol | 27.78 | 10.44 |
| AT1G76950.1 | Thale cress | cytosol | 28.79 | 10.34 |
| AT5G12350.1 | Thale cress | nucleus | 28.03 | 10.33 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 28.03 | 10.3 |
| AT4G14368.1 | Thale cress | cytosol | 28.28 | 10.13 |
| AT5G19420.2 | Thale cress | mitochondrion | 27.78 | 9.66 |
| AT1G69710.1 | Thale cress | cytosol | 25.25 | 9.61 |
| AT3G47660.4 | Thale cress | cytosol | 23.74 | 9.49 |
| AT1G65920.1 | Thale cress | cytosol | 23.23 | 9.15 |
| Os02t0684900-01 | Rice | cytosol | 0.25 | 0.23 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:35.1 | EntrezGene:831461 | UniProt:A0A178UBC9 | ProteinID:AED92240.1 | ArrayExpress:AT5G16040 |
| EnsemblPlantsGene:AT5G16040 | RefSeq:AT5G16040 | TAIR:AT5G16040 | RefSeq:AT5G16040-TAIR-G | EnsemblPlants:AT5G16040.1 | TAIR:AT5G16040.1 |
| Unigene:At.49027 | EMBL:BT028960 | ProteinID:CAC01803.1 | GO:GO:0008150 | InterPro:IPR000408 | InterPro:IPR009091 |
| RefSeq:NP_197108.1 | ProteinID:OAO91208.1 | PFAM:PF00415 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | UniProt:Q9LFS0 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SUPFAM:SSF50985 | UniParc:UPI000009DFBE | SEG:seg | : | : | : |
Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
Coordinates
chr5:-:5240675..5243473
Molecular Weight (calculated)
42901.2 Da
IEP (calculated)
5.424
GRAVY (calculated)
-0.458
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.