Factsheet for AT1G65920.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31624	Canola	cytosol	82.41	84.33
Bra038181.1-P	Field mustard	cytosol	84.0	84.33
CDX87989	Canola	cytosol	83.9	84.23
CDX87986	Canola	cytosol	16.8	82.04
VIT_04s0079g00290.t01	Wine grape	cytosol	49.9	49.95
Solyc02g036390.1.1	Tomato	cytosol	38.87	49.81
KRG98005	Soybean	cytosol	50.5	47.48
PGSC0003DMT400043094	Potato	nucleus	50.7	47.4
KRH30884	Soybean	cytosol	50.0	46.83
GSMUA_Achr1P02140_001	Banana	cytosol	40.56	45.69
GSMUA_Achr5P11650_001	Banana	cytosol	41.25	42.78
Zm00001d017641_P004	Maize	cytosol	36.28	42.39
TraesCS6A01G261000.1	Wheat	cytosol	37.48	41.29
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	41.25	40.57
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	41.55	40.54
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	41.65	39.83
TraesCS6D01G241800.1	Wheat	cytosol	40.95	38.83
TraesCS6B01G288400.1	Wheat	cytosol	41.05	38.71
KXG26989	Sorghum	cytosol	40.85	38.52
Os04t0583700-00	Rice	cytosol	39.36	38.3
HORVU6Hr1G066460.5	Barley	cytosol	40.26	37.96
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	40.06	37.56
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	41.35	37.48
Zm00001d051479_P005	Maize	nucleus	40.06	37.45
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	41.45	36.1
AT5G12350.1	Thale cress	nucleus	38.37	35.91
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	37.38	34.88
AT5G19420.2	Thale cress	mitochondrion	39.26	34.68
AT1G76950.1	Thale cress	cytosol	37.18	33.91
AT3G23270.2	Thale cress	cytosol	34.69	33.11
AT1G69710.1	Thale cress	cytosol	34.1	32.95
AT4G14368.1	Thale cress	cytosol	33.3	30.29
AT5G63860.1	Thale cress	cytosol	13.12	30.0
AT3G47660.4	Thale cress	cytosol	29.22	29.7
AT1G27060.1	Thale cress	cytosol	10.44	27.2
AT5G08710.1	Thale cress	mitochondrion	11.53	26.73
AT3G02300.2	Thale cress	cytosol	11.93	24.9
Solyc02g081250.1.1	Tomato	cytosol	50.89	24.53
AT3G02510.1	Thale cress	cytosol	9.44	24.17
AT5G60870.2	Thale cress	mitochondrion	10.54	23.45
AT5G16040.1	Thale cress	cytosol	9.15	23.23
AT3G15430.2	Thale cress	cytosol	10.84	22.34
AT3G26100.5	Thale cress	cytosol, plastid	11.03	20.86

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:842904	ProteinID:AAF06053.1
ProteinID:AEE34441.1	ArrayExpress:AT1G65920	EnsemblPlantsGene:AT1G65920	RefSeq:AT1G65920	TAIR:AT1G65920	RefSeq:AT1G65920-TAIR-G
EnsemblPlants:AT1G65920.1	TAIR:AT1G65920.1	Unigene:At.35824	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0016020	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	RefSeq:NP_176767.1
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf
InterPro:PH_domain	PO:PO:0000005	PO:PO:0000037	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009052	PO:PO:0020100
PO:PO:0025022	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	UniProt:Q9SRZ7	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI00000A415E	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]

Coordinates

chr1:-:24525102..24529362

Molecular Weight (calculated)

111119.0 Da

IEP (calculated)

8.522

GRAVY (calculated)

-0.433

Length

1006 amino acids

Sequence
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.