Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017641_P004 | Maize | cytosol | 72.03 | 90.01 |
| OQU85620 | Sorghum | cytosol, mitochondrion, nucleus | 86.15 | 86.39 |
| TraesCS6A01G261000.1 | Wheat | cytosol | 58.83 | 69.33 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 67.19 | 68.14 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 66.45 | 67.01 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 66.36 | 66.92 |
| Zm00001d002544_P004 | Maize | cytosol, endoplasmic reticulum, nucleus | 53.9 | 52.25 |
| GSMUA_Achr1P02140_001 | Banana | cytosol | 40.89 | 49.27 |
| CDX87986 | Canola | cytosol | 9.2 | 48.06 |
| GSMUA_Achr5P11650_001 | Banana | cytosol | 42.01 | 46.6 |
| Solyc02g036390.1.1 | Tomato | cytosol | 31.51 | 43.18 |
| KRG98005 | Soybean | cytosol | 40.06 | 40.28 |
| AT1G65920.1 | Thale cress | cytosol | 37.45 | 40.06 |
| KRH30884 | Soybean | cytosol | 39.96 | 40.04 |
| CDY31624 | Canola | cytosol | 36.06 | 39.47 |
| VIT_04s0079g00290.t01 | Wine grape | cytosol | 36.8 | 39.4 |
| Bra038181.1-P | Field mustard | cytosol | 36.15 | 38.82 |
| CDX87989 | Canola | cytosol | 36.15 | 38.82 |
| PGSC0003DMT400043094 | Potato | nucleus | 38.66 | 38.66 |
| Zm00001d042074_P001 | Maize | cytosol | 34.76 | 34.28 |
| Zm00001d011851_P001 | Maize | cytosol | 34.85 | 33.54 |
| Zm00001d011805_P001 | Maize | cytosol | 28.25 | 33.33 |
| Zm00001d011660_P003 | Maize | cytosol | 32.53 | 33.11 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 27.88 | 32.72 |
| Zm00001d006773_P001 | Maize | cytosol | 12.08 | 32.26 |
| Zm00001d038882_P002 | Maize | cytosol | 31.41 | 32.04 |
| Zm00001d002876_P001 | Maize | mitochondrion | 31.97 | 31.65 |
| Zm00001d003632_P003 | Maize | extracellular | 12.83 | 31.15 |
| Zm00001d033172_P001 | Maize | cytosol | 11.25 | 25.21 |
| Zm00001d050380_P004 | Maize | cytosol | 9.01 | 24.94 |
| Zm00001d019595_P001 | Maize | cytosol | 10.78 | 24.02 |
| Zm00001d021372_P001 | Maize | mitochondrion | 9.57 | 23.84 |
| Zm00001d005395_P001 | Maize | cytosol | 10.59 | 23.6 |
| Zm00001d043280_P001 | Maize | cytosol | 8.92 | 23.53 |
| Zm00001d052624_P007 | Maize | plastid | 9.85 | 23.14 |
| Zm00001d032229_P002 | Maize | mitochondrion | 8.83 | 22.67 |
| Zm00001d050985_P002 | Maize | cytosol | 10.5 | 20.32 |
| Solyc02g081250.1.1 | Tomato | cytosol | 39.03 | 20.12 |
Protein Annotations
| EntrezGene:103653921 | Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6Q734 |
| ProteinID:AQK54304.1 | InterPro:Brevis_radix_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR000408 |
| InterPro:IPR001849 | InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 |
| PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF16457 | InterPro:PH-like_dom_sf | InterPro:PH_domain |
| PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50119 | PFscan:PS50178 | PFscan:PS51514 |
| PANTHER:PTHR22870 | PANTHER:PTHR22870:SF311 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 |
| SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI00084296A1 | EnsemblPlantsGene:Zm00001d051479 | EnsemblPlants:Zm00001d051479_P005 | EnsemblPlants:Zm00001d051479_T005 |
| InterPro:Znf_B-box | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Putative regulator of chromosome condensation (RCC1) family protein
Coordinates
chr4:+:160033824..160039530
Molecular Weight (calculated)
118580.0 Da
IEP (calculated)
8.802
GRAVY (calculated)
-0.465
Length
1076 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGGFEWSSS ASTTRGVELQ QSIVALKKGA HLLKCGKRGK PKFCTVRLSY DERALIWYSK ERGKRLSLNS VSSVVLGQKT TKLLRLHWPE KESHSLSIIY
0101: KNGESSLDLV CKDRDQAECW YLGLTAVISA PCTPLLLIDS TNSRRINSCT NSPPSYIQQR SRLFAVHDGR NFPKVNSLYG SPRLIQNKYL RNNLDCSEPF
0201: FSPRQRAWSE LDFYLEKISP ELVDRVKNNL RDIKSAEIIN DQRIMQIPKL KQSEGSNAAA DSLKDIFVWG DALGRMSDHG HVSASNISLP RLLKSSEILD
0301: VQSIACGEKH AAIVTKQGQV FSWGEENGGR LGHKTSDSVS DPKIIDSLSS TPVKTIAFGA KFTCAVSVSG ELYEWGEGID SLGFGTNQCQ RSPWFPHKLI
0401: RTSDGISVAK IACGQWHTAI VSSTGKLFTY GHGAFGVLGH GDTRSFVQPK EVESLRGLRV KSVACGPWHT AAIVETSGTL KSNAPGGKLF TWGDAGGEKL
0501: GHTDKKSKLV PTRVESLVDC DFTQVSCGIS LTAVLTITGV VFTIGSKDHG QLGNPRSDTD SACICMVEGP LKTEFVKDIS CGSSHVAVLA MNGKVFTWGK
0601: GTEGQLGLGD YVDRSSPTLV EALEDKQVDS IVCSSNSTAA ICVHGEISSK DQSVCSSCRL AFRFTRKKHN CYNCGSMVCN SCSSNKVHRA ALAPDKSKRC
0701: RVCDACFNEL NKTAEHGKMS CGSKIQKEPS YLAETRTYTP KLSRMLKEAN FIMEKMGSSA QSPGQRNQEP ATPNQMQKER WGQVECPDRF KCARDNIPHR
0801: LTPKKQTIDD YPMRRMADPV SQKTAAPLTQ TTSDRRKEQD LIEKILLEEV KQLQAQMVIL HLSKQVTTLA EECRHRSLKV RLYKRKLEET WLIVRDEATK
0901: CEAAEEIIKV LTNQRNALSN KLLDGLELDG SSIVPNPPDK ALATCKTPPL NSIRDQHNAE AEEVLDTRST ASSNTVAVDD SAAHQNGRSR ASSSSRGYYD
1001: DGGTDSTAAP TDSNGVIEQI ERGVYITVVT SPSGKKGIKR IRFSRKHFGE AEAQKWWERN ESRVFAKYDS VEYLAA
0101: KNGESSLDLV CKDRDQAECW YLGLTAVISA PCTPLLLIDS TNSRRINSCT NSPPSYIQQR SRLFAVHDGR NFPKVNSLYG SPRLIQNKYL RNNLDCSEPF
0201: FSPRQRAWSE LDFYLEKISP ELVDRVKNNL RDIKSAEIIN DQRIMQIPKL KQSEGSNAAA DSLKDIFVWG DALGRMSDHG HVSASNISLP RLLKSSEILD
0301: VQSIACGEKH AAIVTKQGQV FSWGEENGGR LGHKTSDSVS DPKIIDSLSS TPVKTIAFGA KFTCAVSVSG ELYEWGEGID SLGFGTNQCQ RSPWFPHKLI
0401: RTSDGISVAK IACGQWHTAI VSSTGKLFTY GHGAFGVLGH GDTRSFVQPK EVESLRGLRV KSVACGPWHT AAIVETSGTL KSNAPGGKLF TWGDAGGEKL
0501: GHTDKKSKLV PTRVESLVDC DFTQVSCGIS LTAVLTITGV VFTIGSKDHG QLGNPRSDTD SACICMVEGP LKTEFVKDIS CGSSHVAVLA MNGKVFTWGK
0601: GTEGQLGLGD YVDRSSPTLV EALEDKQVDS IVCSSNSTAA ICVHGEISSK DQSVCSSCRL AFRFTRKKHN CYNCGSMVCN SCSSNKVHRA ALAPDKSKRC
0701: RVCDACFNEL NKTAEHGKMS CGSKIQKEPS YLAETRTYTP KLSRMLKEAN FIMEKMGSSA QSPGQRNQEP ATPNQMQKER WGQVECPDRF KCARDNIPHR
0801: LTPKKQTIDD YPMRRMADPV SQKTAAPLTQ TTSDRRKEQD LIEKILLEEV KQLQAQMVIL HLSKQVTTLA EECRHRSLKV RLYKRKLEET WLIVRDEATK
0901: CEAAEEIIKV LTNQRNALSN KLLDGLELDG SSIVPNPPDK ALATCKTPPL NSIRDQHNAE AEEVLDTRST ASSNTVAVDD SAAHQNGRSR ASSSSRGYYD
1001: DGGTDSTAAP TDSNGVIEQI ERGVYITVVT SPSGKKGIKR IRFSRKHFGE AEAQKWWERN ESRVFAKYDS VEYLAA
0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI
Arabidopsis Description
F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.