Factsheet for Zm00001d017641_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051479_P005	Maize	nucleus	90.01	72.03
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	87.69	70.36
TraesCS6A01G261000.1	Wheat	cytosol	63.18	59.58
TraesCS6D01G241800.1	Wheat	cytosol	70.62	57.3
HORVU6Hr1G066460.5	Barley	cytosol	70.27	56.7
TraesCS6B01G288400.1	Wheat	cytosol	70.27	56.7
CDX87986	Canola	cytosol	11.38	47.57
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	58.77	45.59
GSMUA_Achr1P02140_001	Banana	cytosol	46.11	44.46
GSMUA_Achr5P11650_001	Banana	cytosol	46.34	41.13
Solyc02g036390.1.1	Tomato	cytosol	35.66	39.11
KRH30884	Soybean	cytosol	45.76	36.69
KRG98005	Soybean	cytosol	45.41	36.54
AT1G65920.1	Thale cress	cytosol	42.39	36.28
CDY31624	Canola	cytosol	41.35	36.22
Bra038181.1-P	Field mustard	cytosol	41.46	35.63
CDX87989	Canola	cytosol	41.23	35.43
VIT_04s0079g00290.t01	Wine grape	cytosol	41.12	35.22
PGSC0003DMT400043094	Potato	nucleus	43.32	34.67
Zm00001d042074_P001	Maize	cytosol	40.07	31.62
Zm00001d011851_P001	Maize	cytosol	39.95	30.77
Zm00001d011660_P003	Maize	cytosol	37.4	30.46
Zm00001d006773_P001	Maize	cytosol	14.17	30.27
Zm00001d011805_P001	Maize	cytosol	32.06	30.26
Zm00001d038882_P002	Maize	cytosol	36.82	30.05
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	31.13	29.23
Zm00001d002876_P001	Maize	mitochondrion	36.35	28.79
Zm00001d003632_P003	Maize	extracellular	14.75	28.67
Zm00001d050380_P004	Maize	cytosol	10.69	23.65
Zm00001d033172_P001	Maize	cytosol	13.01	23.33
Zm00001d019595_P001	Maize	cytosol	12.66	22.57
Zm00001d032229_P002	Maize	mitochondrion	10.8	22.2
Zm00001d005395_P001	Maize	cytosol	12.43	22.15
Zm00001d043280_P001	Maize	cytosol	10.45	22.06
Zm00001d021372_P001	Maize	mitochondrion	11.03	21.99
Zm00001d052624_P007	Maize	plastid	11.15	20.96
Zm00001d050985_P002	Maize	cytosol	12.2	18.88
Solyc02g081250.1.1	Tomato	cytosol	43.55	17.97

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6HG44	ProteinID:AQK73611.1
InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408
InterPro:IPR001849	InterPro:IPR007110	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	InterPro:Ig-like_dom	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF16457
InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS50835	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF311	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000843E274	EnsemblPlantsGene:Zm00001d017641
EnsemblPlants:Zm00001d017641_P004	EnsemblPlants:Zm00001d017641_T004	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Coordinates

chr5:+:202867050..202880992

Molecular Weight (calculated)

95369.0 Da

IEP (calculated)

9.566

GRAVY (calculated)

-0.483

Length

861 amino acids

Sequence
(BLAST)

001: MAGGFEWRTS ASTTRGVEQA IITLKEGAHL LKCGKRGKPK FCTVRLSYDE RALIWYSKNR GKHLSLNSVF SVVLGQKTTK LLRLHWPEKE SHSLSIIYKN
101: GESSLDLVCK DRDQAECWYL GLTALISAPS TPLLLVNSTN SRRINSCTNS PPSYIQQRSR LFTVRDGRNF PKSIACGEKH AAIVTKQGKV FSWGEENGGR
201: LGHKTSDSVS DPKIIDSLAS TPMKTIALGA KYTCAVSVSG ELYEWGEGIH SLGFKNNQCQ RSPWFPHKLI RTSDGISVAK IACGQWHTAI VSSTGKLFTY
301: GHGTFGVLGH GDTRSVVQPK EVESLRGLRV KSVACGPWHT AAIVETSGTP KSNAPGGKLF TWGNASGEKL GHTDKKSKLV PTRVESLIDC DFTQVSCGMS
401: LTAVLTITGV VFTIGSKDHG QLGNPRSDSA CICMVEGPLK TEFVKDISSG NSHVAVLTMN GKVFTWGKGT EGQLGLGDYL DRTFPTLVEA LEDKQVDSIV
501: CSSNFTAVIC VHGEISSKDT VCSSCRLAFR FTRKKHNCYN CGSMFCNSCS SNKVQRATLA PDKSKRCRVC DACFNELNKT AEHGKMSCES KIQKEPPLTE
601: TRTYTPKLSR MLKEANFIME KMGSIRSPNQ RNQESATLNQ MQKQRWGQVE CPDQFKCARD NISHCLTSKK QPVDIGRIGR MNDPVSQKTA APLTRTTDKR
701: RKEQDLIEKI MLEEVKQLQA QVTTLAEECR HRSLKVQLYK RKLEETWLIA RDEATKCNAA KEIIKILTNQ NGRRASNSSR GYDGGTDSTV APTDSSGMIE
801: QIERGVYISV VTSPDGKKGI KSIRFSRKHF GETEAQKWWE ENESRVFAKY NSMEYLAAQC R

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.