Factsheet for Zm00001d011851_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34127	Sorghum	cytosol	79.79	96.75
Zm00001d042074_P001	Maize	cytosol	93.65	95.97
TraesCS3B01G543500.1	Wheat	cytosol	83.99	86.23
TraesCS3D01G489600.1	Wheat	cytosol	83.9	86.13
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	82.29	83.71
Os01t0952300-00	Rice	cytosol	85.42	83.55
GSMUA_Achr5P08220_001	Banana	cytosol	74.69	75.91
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	62.52	74.76
VIT_06s0009g03550.t01	Wine grape	nucleus	73.97	74.71
KRH14571	Soybean	nucleus	73.61	74.35
KRH73555	Soybean	nucleus	73.43	74.1
Solyc11g065120.1.1	Tomato	cytosol	74.51	73.78
AT5G12350.1	Thale cress	nucleus	70.75	73.58
KRG99075	Soybean	nucleus	72.54	73.33
KRH45937	Soybean	nucleus	72.27	72.86
CDX85690	Canola	nucleus	69.5	72.62
CDX91165	Canola	nucleus	69.68	72.6
Solyc12g099740.1.1	Tomato	nucleus	66.55	72.59
Bra008895.1-P	Field mustard	nucleus	68.96	72.46
CDX69686	Canola	nucleus	69.14	72.24
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	70.93	72.22
CDX97187	Canola	nucleus	68.07	71.93
Bra006504.1-P	Field mustard	cytosol	70.75	71.71
CDX88891	Canola	cytosol, mitochondrion, nucleus	71.02	69.96
Bra023374.1-P	Field mustard	nucleus	69.5	69.87
CDX70876	Canola	cytosol	69.59	69.78
CDX92532	Canola	nucleus	69.5	69.75
AT5G19420.2	Thale cress	mitochondrion	71.02	69.71
CDY13998	Canola	nucleus	69.5	69.62
Bra002235.1-P	Field mustard	nucleus	68.07	68.31
Zm00001d011805_P001	Maize	cytosol	39.27	48.14
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.82	47.33
Zm00001d006773_P001	Maize	cytosol	16.46	45.66
Zm00001d002876_P001	Maize	mitochondrion	43.29	44.53
Zm00001d011660_P003	Maize	cytosol	41.59	43.99
Zm00001d038882_P002	Maize	cytosol	40.16	42.56
Zm00001d017641_P004	Maize	cytosol	30.77	39.95
Zm00001d003632_P003	Maize	extracellular	14.58	36.79
Zm00001d051479_P005	Maize	nucleus	33.54	34.85
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	34.44	34.68
Zm00001d021372_P001	Maize	mitochondrion	11.81	30.56
Zm00001d019595_P001	Maize	cytosol	12.61	29.19
Zm00001d005395_P001	Maize	cytosol	12.43	28.78
Zm00001d050380_P004	Maize	cytosol	9.84	28.28
Zm00001d043280_P001	Maize	cytosol	10.2	27.94
Zm00001d033172_P001	Maize	cytosol	11.45	26.67
Zm00001d032229_P002	Maize	mitochondrion	9.93	26.49
Zm00001d052624_P007	Maize	plastid	10.38	25.33
Zm00001d050985_P002	Maize	cytosol	11.54	23.2

Protein Annotations

EntrezGene:103636281	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6G474
ProteinID:AQK98133.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16627
InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF212	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI00084336E0	EnsemblPlantsGene:Zm00001d011851	EnsemblPlants:Zm00001d011851_P001	EnsemblPlants:Zm00001d011851_T001
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative regulator of chromosome condensation (RCC1) family protein

Coordinates

chr8:+:162797209..162805481

Molecular Weight (calculated)

121002.0 Da

IEP (calculated)

8.843

GRAVY (calculated)

-0.414

Length

1118 amino acids

Sequence
(BLAST)

0001: MSDVSLDLGG IRAGPVERDI EQAITALKKG AYLLKYGRRG KPKFCPFRLS NDESVLIWFS GKEEKHLRLS HISKIIPGQR TVKVFPFSIR DEIGCLTLLT
0101: RPFFIIQSIF QRYPRPEKEC QSFSLISHDR SLDVICKDKD EAEVWFAGLK TLISRCHQRK WRTESRSDLL SSGATSPRTY TRRSSPLSSP FSSNDSIHKD
0201: GSDNYRLRTP YGSPPKNGLE KAFSDVMLYA VPPRGFFPSD SNAGSVHSMS SGHSDNTNGH PRGVPMDAFR ASYSSAVSSS SHGSGHDDGD ALGDVFIWGE
0301: GTGEGILGGG GSRVGSSSGA KMDCLVPKPL EFAVRLDVQN ISCGGRHAAL VTKQGEIYSW GEESGGRLGH GVDCDVSQPK LIDALSHMNI ELVACGEYHT
0401: CAVTLSGDLY TWGDGTFKFG LLGHGNDISH WVPKHVNGPL EGIHVSSISC GPWHTAVVTS AGQLFTFGDG SFGVLGHGDR ESISVPREVE SLKGLRTVRA
0501: ACGVWHTAAV VEVMAGNSSS SNCSSGKIFT WGDGDKGRLG HGDKGPKLVP TCVAALVEPN FCQVACGHCL TVALTTSGHV YTMGSAVYGQ LGNAQADGML
0601: PVRVEGKLHK NFVEEISCGA YHVAVLTSKT EVYTWGKGAN GRLGHGDTDD KNTPTLVEAL KDKQVRIVVC GINFTAAICI HKWVSGVDQS MCSGCRQPFN
0701: LRRKRHNCYN CALVFCHSCS SKKSLKASLA PNTNKPYRVC DTCYSKLTKG LETDMHSSAK RAATVPGVSD ANEEDLETRS NAQLSRLSSM ESFKHLDSRY
0801: SKKNKKFEFN STRVSPVPNG SSHWSGLNIS RSFNPVFGSS KKFFSASVPG SRIVSRATSP ISRRASPPRS TTPTPTLGGL TSPRVVPNDG KPTNDALSQE
0901: VLNLRSQVES LARKSQLLEV ELERTTKQLK EAISIAGEET AKCKAAKEVI KSLTAQLKGM AERLPGGAAK NTKLPPLPGI FIPSDIPSMP TESEGSPSSS
1001: GEQIINGHNG LLTSNGQSSI RNKTSHPEVG KNGGRLPDAE SCHDAEWVEQ DEPGVYITLT ALPGGARDLK RVRFSRKRFS ETQAEQWWQQ NRARVYQQYN
1101: VRVIDKSTAS VNSDIAAN

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.