Factsheet for Zm00001d042074_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34127	Sorghum	cytosol	82.31	97.4
Zm00001d011851_P001	Maize	cytosol	95.97	93.65
TraesCS3D01G489600.1	Wheat	cytosol	87.08	87.24
TraesCS3B01G543500.1	Wheat	cytosol	87.08	87.24
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	85.33	84.71
Os01t0952300-00	Rice	cytosol	88.08	84.08
GSMUA_Achr5P08220_001	Banana	cytosol	77.18	76.55
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	64.62	75.4
VIT_06s0009g03550.t01	Wine grape	nucleus	76.17	75.07
KRH14571	Soybean	nucleus	75.71	74.62
KRH73555	Soybean	nucleus	75.62	74.46
Solyc11g065120.1.1	Tomato	cytosol	76.54	73.96
AT5G12350.1	Thale cress	nucleus	72.59	73.67
KRG99075	Soybean	nucleus	74.24	73.24
CDX85690	Canola	nucleus	71.4	72.8
KRH45937	Soybean	nucleus	73.97	72.77
CDX91165	Canola	nucleus	71.31	72.51
Solyc12g099740.1.1	Tomato	nucleus	68.1	72.49
Bra008895.1-P	Field mustard	nucleus	70.67	72.46
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	72.87	72.4
CDX69686	Canola	nucleus	70.85	72.24
CDX97187	Canola	nucleus	69.66	71.83
Bra006504.1-P	Field mustard	cytosol	72.5	71.71
CDX92532	Canola	nucleus	71.4	69.93
AT5G19420.2	Thale cress	mitochondrion	72.96	69.89
Bra023374.1-P	Field mustard	nucleus	71.22	69.87
CDX88891	Canola	cytosol, mitochondrion, nucleus	72.69	69.87
CDX70876	Canola	cytosol	71.22	69.69
CDY13998	Canola	nucleus	71.04	69.44
Bra002235.1-P	Field mustard	nucleus	69.84	68.4
Zm00001d011805_P001	Maize	cytosol	40.79	48.79
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.24	47.87
Zm00001d006773_P001	Maize	cytosol	16.87	45.66
Zm00001d002876_P001	Maize	mitochondrion	44.91	45.08
Zm00001d011660_P003	Maize	cytosol	43.08	44.47
Zm00001d038882_P002	Maize	cytosol	41.89	43.32
Zm00001d017641_P004	Maize	cytosol	31.62	40.07
Zm00001d003632_P003	Maize	extracellular	14.76	36.34
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	35.56	34.95
Zm00001d051479_P005	Maize	nucleus	34.28	34.76
Zm00001d021372_P001	Maize	mitochondrion	12.1	30.56
Zm00001d019595_P001	Maize	cytosol	12.92	29.19
Zm00001d005395_P001	Maize	cytosol	12.74	28.78
Zm00001d050380_P004	Maize	cytosol	10.08	28.28
Zm00001d043280_P001	Maize	cytosol	10.27	27.45
Zm00001d033172_P001	Maize	cytosol	11.73	26.67
Zm00001d032229_P002	Maize	mitochondrion	10.17	26.49
Zm00001d052624_P007	Maize	plastid	10.72	25.55
Zm00001d050985_P002	Maize	cytosol	12.01	23.56

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6N107	InterPro:BRX_N
InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	ProteinID:ONM34461.1
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16627	InterPro:PH-like_dom_sf
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF212	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI000843950B	EnsemblPlantsGene:Zm00001d042074	EnsemblPlants:Zm00001d042074_P001	EnsemblPlants:Zm00001d042074_T001	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Coordinates

chr3:+:149689421..149700461

Molecular Weight (calculated)

118054.0 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.448

Length

1091 amino acids

Sequence
(BLAST)

0001: MSDVSSDLGG IRAGPVERDI EQAITALKKG AYLLKYGRRG KPKFCPFRLS NDESVLIWFS GKEEKHLRLS HVSRIIPGQR TAIFQRYPRP EKECQSFSLI
0101: SHDRSLDIIC KDKDEAEVWF AGLKTLISRC HQRKWRTESR SDILSSGATS PRTYTRRSSP LSSPFSSNDS IHKDGSDNYR LRTPYGSPPK NGLEKAFSDV
0201: MLYAVPPRGF FPSDSNAGSV HSMSSGQSDN TNGHSRGVPM DAFRVSYSSA VSSSSHGSGH DDGDALGDVF IWGEGTGEGI LGGGGSRVGS SSGAKMDCLV
0301: PKPLEFAVRL DVQNISCGGR HAALVTKQGE IYSWGEESGG RLGHGVDCDV SQPKLIDALS HMNIELVACG EYHTCAVTLS GDLYTWGDGT FKFGLLGHGN
0401: DVSHWVPKHV NGPLEGIHVS SISCGPWHTA LVTSAGQLFT FGDGSFGVLG HGDRESISVP REVESLKGLR TVRAACGVWH TAAVVEVMSV NSNSSNCSSG
0501: KIFTWGDGDK GRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHCLTVALTT SGHVYTMGSA VYGQLGNAQA DGMLPVRVEG KLYKNFVEEI SCGAYHVAVL
0601: TSRTEVYTWG KGANGRLGHG DTEDKNTPTL VEALKDKQVR NVVCGINFTA AICIHKWVSG VDQSMCSGCR QPFNLRRKRH NCYNCALVFC HSCSSKKSLK
0701: ASLAPNGNKP YRVCDTCYSK LTKGLETDMH FSAKRAATVP GFSDTIEEDL ETRSNAQLSR LSSMESFKHL DSRYSKKNKK FEFNSTRVSP VPNGSSHWSG
0801: LNISRSFNPV FGSSKKFFSA SVPGSRIVSR ATSPISRRTS PPRSTTPTPT LGGLTSPRVP TDGKPTNDAL SQEVLNLRSQ VESLTRKSQL LELELERTTK
0901: QLKEAISIAG EETAKCKAAK EVIKSLTAQL KGMAERLPGG AAKNTKLPPL PGISIPSDIS SLAMESVGSP SSSGEQIING HNGLLASNGP SSVRNKTSHP
1001: EVGKNGSRPP DAESCHDAEW VEQDEPGVYI TLTALPGGAR DLKRVRFSRK RFSETQAEQW WQENRARVYQ QYNVRVVDKS TASADNDIAA N

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.