CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006504.1-P	Field mustard	cytosol	96.32	97.37
CDX88891	Canola	cytosol, mitochondrion, nucleus	98.12	96.39
AT5G19420.2	Thale cress	mitochondrion	90.49	88.59
CDX92532	Canola	nucleus	88.16	88.24
CDY13998	Canola	nucleus	88.25	88.17
CDX69686	Canola	nucleus	81.44	84.86
CDX91165	Canola	nucleus	81.61	84.81
CDX85690	Canola	nucleus	81.26	84.67
CDX97187	Canola	nucleus	79.82	84.12
KRH14571	Soybean	nucleus	76.95	77.51
VIT_06s0009g03550.t01	Wine grape	nucleus	76.86	77.42
KRH73555	Soybean	nucleus	76.23	76.71
KRG99075	Soybean	nucleus	74.98	75.59
KRH45937	Soybean	nucleus	74.44	74.84
Solyc11g065120.1.1	Tomato	cytosol	75.43	74.49
Solyc12g099740.1.1	Tomato	nucleus	67.44	73.37
Zm00001d042074_P001	Maize	cytosol	69.69	71.22
TraesCS1D01G240700.1	Wheat	cytosol	69.33	70.72
TraesCS1A01G240600.2	Wheat	cytosol	69.42	70.56
TraesCS1B01G252700.2	Wheat	cytosol	69.15	70.41
Os05t0384800-01	Rice	cytosol	68.16	69.98
Zm00001d011851_P001	Maize	cytosol	69.78	69.59
KXG34127	Sorghum	cytosol	57.49	69.52
GSMUA_Achr5P08220_001	Banana	cytosol	68.52	69.45
TraesCS3B01G543500.1	Wheat	cytosol	67.26	68.87
HORVU0Hr1G028990.2	Barley	cytosol	24.3	68.78
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	69.33	68.71
TraesCS3D01G489600.1	Wheat	cytosol	67.09	68.69
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	57.58	68.66
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	66.73	67.7
Os01t0952300-00	Rice	cytosol	67.71	66.05
CDY70949	Canola	cytosol	16.77	52.82
CDY47138	Canola	cytosol	46.91	49.95
CDY11586	Canola	cytosol	46.82	49.57
CDX88324	Canola	cytosol	46.64	49.01
CDY66504	Canola	cytosol	36.23	48.97
CDX87557	Canola	cytosol	46.46	48.28
CDX87986	Canola	cytosol	8.88	48.06
CDY48550	Canola	cytosol	42.06	47.86
CDY44086	Canola	plasma membrane, vacuole	44.39	47.05
CDY28580	Canola	plasma membrane	44.04	47.03
CDX68076	Canola	cytosol	34.62	46.51
CDX77871	Canola	cytosol	37.94	44.57
CDY21795	Canola	cytosol	38.03	44.31
CDY12764	Canola	cytosol	40.45	43.03
CDX85076	Canola	cytosol	39.82	42.77
CDY49416	Canola	cytosol	40.36	40.21
CDX77534	Canola	cytosol	39.91	40.05
CDY31624	Canola	cytosol	33.9	38.45
CDX87989	Canola	cytosol	33.63	37.43
CDY46423	Canola	cytosol	11.39	33.51
CDY31347	Canola	cytosol	13.0	33.26
CDY69131	Canola	cytosol	9.51	33.02
CDY43762	Canola	cytosol	12.47	32.48
CDX81201	Canola	cytosol	12.65	32.05
CDY60046	Canola	cytosol	12.83	31.92
CDY16215	Canola	cytosol	10.94	31.61
CDX84451	Canola	cytosol	12.56	31.39
CDY39843	Canola	cytosol	11.3	31.19
CDY44785	Canola	mitochondrion	11.03	28.41
CDY02190	Canola	mitochondrion	11.21	28.22
CDY51633	Canola	mitochondrion	11.12	27.93
CDY40735	Canola	mitochondrion	10.94	27.92
CDY34733	Canola	cytosol	8.07	26.87
CDY57523	Canola	cytosol	11.03	26.11
CDY43240	Canola	cytosol	11.03	26.06
CDX69479	Canola	cytosol	9.15	25.69
CDY26488	Canola	cytosol	9.06	25.38
CDY04192	Canola	cytosol	11.03	25.0
CDY39172	Canola	cytosol	11.03	25.0
CDX96062	Canola	plastid	11.48	24.71
CDY01845	Canola	plastid	11.39	24.56
CDX97668	Canola	cytosol	10.49	24.53
CDY56827	Canola	cytosol	10.49	24.53
CDY13609	Canola	cytosol	11.48	24.2
CDY28863	Canola	cytosol	11.21	24.04
CDY56518	Canola	cytosol, plastid	11.12	23.85
CDX83586	Canola	cytosol, plastid	11.3	23.82
CDX99731	Canola	cytosol, plastid	11.39	23.74
CDY40988	Canola	cytosol, plastid	11.03	22.4
CDY14709	Canola	nucleus	11.57	18.67
CDY20113	Canola	endoplasmic reticulum, extracellular	11.03	14.91
CDY21840	Canola	endoplasmic reticulum, extracellular	10.85	14.65

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078C1J2	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDX70876	ProteinID:CDX70876	ProteinID:CDX70876.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00140774001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	PFAM:PF16627	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI0004EE1090	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC03g09600D

Coordinates

chrLK031791:-:2536348..2542096

Molecular Weight (calculated)

122060.0 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.522

Length

1115 amino acids

Sequence
(BLAST)

0001: MSRNARMTSD LSRAGPVARD VEQLNTQDSF GVSKLESKLY NLVHEFLAAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGNEE KHLKLSHVSR
0101: IISGQRTPIF QRYPRPEKEY QSFSLIYNER SLDVICKDKD EAEVWFSGLK ALISRCHQRR WRTESRSDGT PSEATSPRTY TRRSSPLHSP FSSNESFLKD
0201: GSNHHRLHSP YESPPKNGID KAFSDMSLYA LPPKGFFPSD PATISVHSLS SGASDSVHGH MKGMSMDGFR VSLSSAISSS SHGSGHDDGD ALGDVFIWGE
0301: GIGEGVLGGG SHRVGSSFEI KMDSLVPKAL ESSIVLDVQN IACGGQHAVL VTKQGETFSW GEESEGRLGH GVDSNVQHPK LIDALGTTNI ELVACGEYHS
0401: CAVSLSGDLY TWGKGDFGIL GHGNEVSHWI PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDKKS VFIPREVDSL KGLRTVRAAC
0501: GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKGRLGHG NKEPKLVPTC VAALVETNFC QVACGHSLTE SPVYGQLRNP HAEKKVPARV EGKLHKSFVE
0601: EIACGAYHVA VLTAKTEVYT WGKGSNGRLG HGDVDDRNSP TLVESLRDKQ VKSIACGSNF TAAVCLHKWA SGMDQSMCSG CRQPFNLRRK RHNCYNCGLV
0701: FCHSCSSKKS LKACMAPNQN KPFRVCDKCF NKLKKAMETD GSSHSSLSRR ESVNQGSDAI DRDEKLESRS DGQLTRFSLL EPVRQVDNRS KKNKKYEFNS
0801: SRVSPVPGSH RGSLNITKSF NPTFGVSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLVTP RIVVDDTKRT NDNVSQEVLM LRSQVENLTR
0901: KAQLQEVELE RTTKQLKEAL AIASEETARC KAAKDVIKSL TAQLKDMAER LPVGSARTIK SPSHNSFGSS PDYVAPSSNS LNRPNSRGSD PDGPNTIPMF
1001: ANGASTPVFD GASFRQQANH AAESINRIST RAKESEARNE NEWVEQDEPG VYITLTALPG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRLV
1101: VDKSSVGVGS EDLAH

Best Arabidopsis Sequence Match ( AT5G19420.2 )
(BLAST)

0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE
0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP
0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD
0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI
0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL
0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG
0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC
0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS
0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD
0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP
1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS
1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.