Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G543500.1 | Wheat | cytosol | 99.27 | 99.27 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 94.21 | 93.36 |
| Zm00001d042074_P001 | Maize | cytosol | 87.24 | 87.08 |
| KXG34127 | Sorghum | cytosol | 72.91 | 86.12 |
| Zm00001d011851_P001 | Maize | cytosol | 86.13 | 83.9 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 83.1 | 82.8 |
| Os01t0952300-00 | Rice | cytosol | 84.21 | 80.23 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 74.1 | 73.36 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 62.17 | 72.41 |
| KRH14571 | Soybean | nucleus | 73.28 | 72.09 |
| VIT_06s0009g03550.t01 | Wine grape | nucleus | 73.0 | 71.82 |
| KRH73555 | Soybean | nucleus | 73.0 | 71.75 |
| Solyc11g065120.1.1 | Tomato | cytosol | 73.83 | 71.21 |
| AT5G12350.1 | Thale cress | nucleus | 69.51 | 70.42 |
| Bra008895.1-P | Field mustard | nucleus | 68.59 | 70.21 |
| KRG99075 | Soybean | nucleus | 71.26 | 70.16 |
| VIT_13s0067g03380.t01 | Wine grape | endoplasmic reticulum, extracellular | 70.71 | 70.13 |
| Solyc12g099740.1.1 | Tomato | nucleus | 65.75 | 69.85 |
| CDX85690 | Canola | nucleus | 68.59 | 69.81 |
| CDX69686 | Canola | nucleus | 68.59 | 69.81 |
| KRH45937 | Soybean | nucleus | 70.98 | 69.7 |
| CDX91165 | Canola | nucleus | 68.5 | 69.52 |
| CDX97187 | Canola | nucleus | 67.31 | 69.28 |
| Bra006504.1-P | Field mustard | cytosol | 70.16 | 69.27 |
| CDX92532 | Canola | nucleus | 69.15 | 67.59 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 70.43 | 67.58 |
| Bra023374.1-P | Field mustard | nucleus | 68.69 | 67.27 |
| CDY13998 | Canola | nucleus | 68.78 | 67.11 |
| CDX70876 | Canola | cytosol | 68.69 | 67.09 |
| AT5G19420.2 | Thale cress | mitochondrion | 70.16 | 67.08 |
| Bra002235.1-P | Field mustard | nucleus | 67.68 | 66.16 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 49.04 | 52.3 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 39.03 | 46.75 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 35.9 | 44.99 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 43.25 | 44.02 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 42.15 | 43.59 |
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 36.18 | 38.51 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 36.46 | 37.42 |
| TraesCS6D01G142500.1 | Wheat | golgi | 14.97 | 37.05 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 14.78 | 36.34 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 11.66 | 30.31 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 11.94 | 29.68 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 9.73 | 28.12 |
| TraesCS2D01G241400.2 | Wheat | cytosol | 12.21 | 27.48 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 5.23 | 25.56 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 9.27 | 24.82 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 10.93 | 24.79 |
| TraesCS2D01G340500.1 | Wheat | cytosol | 8.72 | 21.69 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 |
| PFAM:PF08381 | PFAM:PF13713 | PFAM:PF16627 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF212 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS3D01G489600 |
| EnsemblPlants:TraesCS3D01G489600.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 |
| TIGR:cd13365 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:583931102..583937314
Molecular Weight (calculated)
117428.0 Da
IEP (calculated)
8.713
GRAVY (calculated)
-0.454
Length
1089 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDASSDLGG ARAGPLPVVE RDLEQAITAL KKGAYLLKYG RRGKPKFCPF RLSNDESVLI WFSGKEEKHL RLSHVSRIMP GQRTAIFQRY PRPEKECQSF
0101: SLISHDRSLD IICKDKDEAE VWFAGLKTLI SRSHQRKWRT GSRSDTISSA ATSPRTYTRQ SSPLSSPFSS SDSLHKDFNE NYRFRSPYGS PPKNGLEKAF
0201: SDVALYAAPP RGFFPSDSNA ASVHSMSSGQ SDNTNGNSGG IPMDAFRISY SSAVSSSSHG SGYDDGDALG DVLIWGEGTG EGILGGGNSR IGSSSGAKID
0301: CLVPKPLEFA VRLDVQNISC GGRHAALVSK QGEIYSWGEE SGGRLGHGVD CDVAHPKLID ALTHMNIELV ACGEYHTCAV TLSGDLYTWG DGAFKFGLLG
0401: HGNDVSQWVP KKLHGPLEGI HVSSISCGPW HTAIVTSAGQ LFTFGDGSFG VLGHGDRESL SVPKEVESLK GLRTVRAACG VWHTAAVVEV MVGNSSSSNC
0501: SSGKIFTWGD GDKGRLGHGD KESRLVPTCV AALVEPNFCQ VACGHSLTVA LTTSGNVYTM GSAVYGQLGN PQADGMLPVR VEGKLHKNFV EEISCGAYHV
0601: AVLTSKTEVY TWGKGANGRL GHGNTDDKNT PTLVEALKDK QVRSVVCGTN FTAAVCIHKW VSGVDQSMCS GCRQPFNLRR KRHNCYNCAL VFCHSCSSKK
0701: SLKASLAPNQ SKPYRVCDSC YSKLTKGPGS DMYPSAKQGA VVQGFSDTVD EELETRSNAK LSRISSMESF KNMDSRYSKK NKKFEFNSTR LSPVPNGGSR
0801: SFNPVFGSSK KFLSASVPGS RIISRATSPV SRRSSPPRSI TPTPTLRSLT SPGGVINGTK PTNDSQTQEV LSLKSQVDNL TRKSQHLELE LERTTKQLKE
0901: AIAIAGEETA KCKAAKEVIK SLTVQLKGMA ERLPGGVAKN GKLPPLPGIP IPSDISAIVT ESLGSPGSSG EQEQISDDPN GLLVSNGSNS VRNKEGHPEM
1001: TNNGSVPPDA ESHHEAEWVE QDEPGVYITL TALPGGARDL KRVRFSRKRF SETQAEQWWQ GNRARVYQQY NVHMVDKSVA AMDRDIATH
0101: SLISHDRSLD IICKDKDEAE VWFAGLKTLI SRSHQRKWRT GSRSDTISSA ATSPRTYTRQ SSPLSSPFSS SDSLHKDFNE NYRFRSPYGS PPKNGLEKAF
0201: SDVALYAAPP RGFFPSDSNA ASVHSMSSGQ SDNTNGNSGG IPMDAFRISY SSAVSSSSHG SGYDDGDALG DVLIWGEGTG EGILGGGNSR IGSSSGAKID
0301: CLVPKPLEFA VRLDVQNISC GGRHAALVSK QGEIYSWGEE SGGRLGHGVD CDVAHPKLID ALTHMNIELV ACGEYHTCAV TLSGDLYTWG DGAFKFGLLG
0401: HGNDVSQWVP KKLHGPLEGI HVSSISCGPW HTAIVTSAGQ LFTFGDGSFG VLGHGDRESL SVPKEVESLK GLRTVRAACG VWHTAAVVEV MVGNSSSSNC
0501: SSGKIFTWGD GDKGRLGHGD KESRLVPTCV AALVEPNFCQ VACGHSLTVA LTTSGNVYTM GSAVYGQLGN PQADGMLPVR VEGKLHKNFV EEISCGAYHV
0601: AVLTSKTEVY TWGKGANGRL GHGNTDDKNT PTLVEALKDK QVRSVVCGTN FTAAVCIHKW VSGVDQSMCS GCRQPFNLRR KRHNCYNCAL VFCHSCSSKK
0701: SLKASLAPNQ SKPYRVCDSC YSKLTKGPGS DMYPSAKQGA VVQGFSDTVD EELETRSNAK LSRISSMESF KNMDSRYSKK NKKFEFNSTR LSPVPNGGSR
0801: SFNPVFGSSK KFLSASVPGS RIISRATSPV SRRSSPPRSI TPTPTLRSLT SPGGVINGTK PTNDSQTQEV LSLKSQVDNL TRKSQHLELE LERTTKQLKE
0901: AIAIAGEETA KCKAAKEVIK SLTVQLKGMA ERLPGGVAKN GKLPPLPGIP IPSDISAIVT ESLGSPGSSG EQEQISDDPN GLLVSNGSNS VRNKEGHPEM
1001: TNNGSVPPDA ESHHEAEWVE QDEPGVYITL TALPGGARDL KRVRFSRKRF SETQAEQWWQ GNRARVYQQY NVHMVDKSVA AMDRDIATH
0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.