Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G053180.5 | Barley | cytosol | 98.75 | 98.75 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 98.54 | 98.54 |
| TraesCS5A01G173400.1 | Wheat | cytosol | 97.71 | 97.91 |
| Zm00001d033172_P001 | Maize | cytosol | 85.62 | 85.62 |
| OQU91404 | Sorghum | cytosol | 85.62 | 84.92 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 54.79 | 79.7 |
| PGSC0003DMT400003726 | Potato | cytosol | 75.0 | 77.25 |
| GSMUA_Achr10P... | Banana | cytosol | 77.71 | 77.23 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 75.21 | 75.52 |
| Os03t0599600-01 | Rice | mitochondrion | 29.58 | 74.74 |
| KRH45102 | Soybean | cytosol, nucleus, peroxisome | 72.71 | 73.63 |
| KRH01383 | Soybean | cytosol | 72.5 | 73.42 |
| CDY57523 | Canola | cytosol | 70.62 | 71.97 |
| Bra039169.1-P | Field mustard | cytosol | 70.42 | 71.76 |
| CDY43240 | Canola | cytosol | 70.42 | 71.61 |
| AT3G02300.2 | Thale cress | cytosol | 70.42 | 70.12 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 22.08 | 25.3 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 18.96 | 24.14 |
| TraesCS6D01G142500.1 | Wheat | golgi | 21.88 | 23.86 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 21.67 | 23.48 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 9.79 | 21.08 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 17.5 | 20.64 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 17.92 | 19.63 |
| TraesCS2D01G241400.2 | Wheat | cytosol | 19.38 | 19.21 |
| TraesCS2D01G340500.1 | Wheat | cytosol | 14.17 | 15.53 |
| TraesCS3D01G522600.2 | Wheat | cytosol | 23.75 | 13.12 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 24.38 | 12.87 |
| TraesCS7D01G187100.3 | Wheat | cytosol | 25.0 | 11.75 |
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 23.54 | 11.05 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 24.38 | 10.93 |
| TraesCS3D01G489600.1 | Wheat | cytosol | 24.79 | 10.93 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 24.38 | 10.7 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 22.5 | 10.26 |
| TraesCS6D01G241800.1 | Wheat | cytosol | 22.29 | 10.08 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G177900.1 | EnsemblPlantsGene:TraesCS5D01G177900 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF321 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:-:277620127..277625058
Molecular Weight (calculated)
51826.4 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.183
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDDVICSL RVVGVPTKSA IYTWGYNQSG QTARKGKERH LRIPKSLPPK LFTCRDGENL RWIDIACGRA HTAAVVSDGS LFTWGANDFG QLGDGTEESA
101: KEPKKVNALA TEFVKSVSCG AHCTAAIAEP RENDGTISRS RLWVWGQNQG SDYPRLYWGA FAPNTVIRQV SCGAVHVVAL SDDGLLQAWG YNEYGQLGRG
201: CTSEGLQGAR VLNAYARFLD DTPELVKIVR VSCGEYHAAA ISENGEVYTW GLGSLGQLGH RSLQSGDKEL IPRRVVALEG IVIRDVSCGG VHSCAVTEGG
301: ALYCWGGGHV GQLGLGPQNG FFSCALNGSD MLLRNIPVLV IPSGVRLVTC GHSHTLISMK DGRIYGWGYN SYGQAANEKS TYAWYPSPVD WCVGEVRRLA
401: AGGGHSAVLT DASSLKELCE FKLAETVNRS NARLIEDVAS RTGADALARL CEKLREHLVE QGDSELMEMH MVEEIEAKAG
101: KEPKKVNALA TEFVKSVSCG AHCTAAIAEP RENDGTISRS RLWVWGQNQG SDYPRLYWGA FAPNTVIRQV SCGAVHVVAL SDDGLLQAWG YNEYGQLGRG
201: CTSEGLQGAR VLNAYARFLD DTPELVKIVR VSCGEYHAAA ISENGEVYTW GLGSLGQLGH RSLQSGDKEL IPRRVVALEG IVIRDVSCGG VHSCAVTEGG
301: ALYCWGGGHV GQLGLGPQNG FFSCALNGSD MLLRNIPVLV IPSGVRLVTC GHSHTLISMK DGRIYGWGYN SYGQAANEKS TYAWYPSPVD WCVGEVRRLA
401: AGGGHSAVLT DASSLKELCE FKLAETVNRS NARLIEDVAS RTGADALARL CEKLREHLVE QGDSELMEMH MVEEIEAKAG
001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.