CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033172_P001	Maize	cytosol	96.9	97.71
HORVU5Hr1G053180.5	Barley	cytosol	85.33	86.04
TraesCS5B01G170800.1	Wheat	cytosol	85.12	85.83
TraesCS5D01G177900.1	Wheat	cytosol	84.92	85.62
TraesCS5A01G173400.1	Wheat	cytosol	84.5	85.39
Solyc02g089220.2.1	Tomato	mitochondrion	53.93	79.09
GSMUA_Achr10P...	Banana	cytosol	78.1	78.26
PGSC0003DMT400003726	Potato	cytosol	73.35	76.18
Os03t0599600-01	Rice	mitochondrion	29.75	75.79
VIT_14s0083g01020.t01	Wine grape	cytosol	73.55	74.48
KRH01383	Soybean	cytosol	70.45	71.94
KRH45102	Soybean	cytosol, nucleus, peroxisome	70.25	71.73
CDY57523	Canola	cytosol	69.42	71.34
Bra039169.1-P	Field mustard	cytosol	69.21	71.13
CDY43240	Canola	cytosol	69.21	70.97
AT3G02300.2	Thale cress	cytosol	69.01	69.29
EES09892	Sorghum	mitochondrion	21.49	24.88
EES10837	Sorghum	cytosol	22.31	24.38
KXG25196	Sorghum	cytosol	18.59	23.02
OQU87663	Sorghum	cytosol	17.98	21.53
EER97183	Sorghum	mitochondrion	17.56	19.68
KXG35074	Sorghum	cytosol	19.42	19.46
EES12399	Sorghum	cytosol, plastid	20.25	18.53
KXG26580	Sorghum	cytosol	20.04	18.06
EES07101	Sorghum	cytosol, plastid	19.01	17.2
EES18851	Sorghum	cytosol, plastid	26.65	14.08
KXG34192	Sorghum	cytosol	25.62	13.6
KXG34127	Sorghum	cytosol	25.41	13.34
EES19890	Sorghum	cytosol	25.41	12.06
EES13137	Sorghum	cytosol	26.45	12.03
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	24.79	11.18
EES01332	Sorghum	cytosol	23.97	10.98
KXG26989	Sorghum	cytosol	22.52	10.22

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	UniProt:A0A1Z5S663	InterPro:IPR000408	InterPro:IPR009091	EnsemblPlants:OQU91404
ProteinID:OQU91404	ProteinID:OQU91404.1	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	EnsemblPlantsGene:SORBI_3001G173400	SUPFAM:SSF50985
UniParc:UPI000B425382	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:14555202..14561436

Molecular Weight (calculated)

52127.7 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.224

Length

484 amino acids

Sequence
(BLAST)

001: MDVDDVLSNL RVVGVPTKSA IYIWGYNHSG QTARKGKECH LRIPKSLPPK LFKLGNGKSL RWTDIACGRE HTAAVASDGS LFTWGANEFG QLGDGTEESA
101: KEPKKVKSLE TEFVKSVSCG AHCTAAVAEP RENDGTVSKS RLWVWGQNQG SDYPRLFWGA FTPNTVIKQV SCGAVHVMAL SEDGLLQAWG YNEYGQLGRG
201: RTSQGLQGAR VLNAYARFLD DAPEQVKIVR VSCGEYHTAA ISENGEVYTW GLGSMGQLGH CSLQSGDNEL IPRRIVALDG IVVRDVSCGG VHSCAVTESG
301: ALYAWGGGHV GQLGVGPQGG FFSCSLNGSD MLLRNIPVLV IPSGVRLATC GHSHTLVSMK DGRIYGWGYN SYGQAANEKS TYAWFPSPVD WCVGEVRRLA
401: AGGGHSAVLT DACSLKELCE FKLAETVNLS NAELIEDVAS RTGADALARL CGKVREHLDK EGECEFLEKQ VAEEVNKQVR PLAR

Best Arabidopsis Sequence Match ( AT3G02300.2 )
(BLAST)

001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.