Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011660_P003 | Maize | cytosol | 94.22 | 94.13 |
| Os01t0700200-01 | Rice | cytosol | 78.5 | 79.41 |
| EES19890 | Sorghum | cytosol | 66.95 | 69.31 |
| CDY66504 | Canola | cytosol | 44.79 | 57.33 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 56.06 | 55.8 |
| PGSC0003DMT400034994 | Potato | cytosol | 51.8 | 52.85 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 53.5 | 52.75 |
| KRH00393 | Soybean | cytosol | 52.65 | 52.01 |
| CDY12764 | Canola | cytosol | 51.52 | 51.91 |
| KRH69117 | Soybean | cytosol | 52.65 | 51.58 |
| CDX85076 | Canola | cytosol | 50.28 | 51.16 |
| KRH31700 | Soybean | cytosol | 52.18 | 51.11 |
| AT3G23270.2 | Thale cress | cytosol | 50.47 | 50.57 |
| KRH40796 | Soybean | cytosol | 35.8 | 50.4 |
| Bra023740.1-P | Field mustard | cytosol | 50.47 | 50.0 |
| CDY49416 | Canola | cytosol | 51.33 | 48.44 |
| AT4G14368.1 | Thale cress | cytosol | 50.38 | 48.1 |
| CDX77534 | Canola | cytosol | 50.47 | 47.97 |
| KXG34192 | Sorghum | cytosol | 39.02 | 45.18 |
| EES13137 | Sorghum | cytosol | 45.08 | 44.74 |
| EES18851 | Sorghum | cytosol, plastid | 38.45 | 44.32 |
| KXG34127 | Sorghum | cytosol | 37.69 | 43.17 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 48.48 | 40.31 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 39.02 | 39.39 |
| KXG26989 | Sorghum | cytosol | 32.77 | 32.43 |
| OQU85620 | Sorghum | cytosol, mitochondrion, nucleus | 32.1 | 31.59 |
| EES10837 | Sorghum | cytosol | 12.5 | 29.8 |
| EES09892 | Sorghum | mitochondrion | 11.65 | 29.43 |
| OQU87663 | Sorghum | cytosol | 10.51 | 27.48 |
| EER97183 | Sorghum | mitochondrion | 10.89 | 26.62 |
| KXG25196 | Sorghum | cytosol | 9.56 | 25.83 |
| KXG35074 | Sorghum | cytosol | 11.08 | 24.22 |
| OQU91404 | Sorghum | cytosol | 10.98 | 23.97 |
| EES07101 | Sorghum | cytosol, plastid | 11.93 | 23.55 |
| KXG26580 | Sorghum | cytosol | 10.89 | 21.42 |
| EES12399 | Sorghum | cytosol, plastid | 10.7 | 21.36 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:8059145 | InterPro:BRX_N |
| InterPro:Brevis_radix_dom | UniProt:C5XHK2 | ncoils:Coil | EnsemblPlants:EES01332 | ProteinID:EES01332 | ProteinID:EES01332.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR011993 |
| InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 |
| PFAM:PF13713 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 |
| PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF87 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 |
| EnsemblPlantsGene:SORBI_3003G269400 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI0001A84756 | RefSeq:XP_002456212.1 |
| InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:+:60614062..60621092
Molecular Weight (calculated)
115304.0 Da
IEP (calculated)
8.338
GRAVY (calculated)
-0.453
Length
1056 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTPDENALIT LKKGSKLIKY SRKGKPKIRS FRLSGDETTL IWYSHKKEKF LRLSSVSKVI PGQRTAVFRR FLRPEKDYLS FSLIYKNGQR SLDLVCKDQV
0101: EVEVWFSALE GLINSCHRNS SVDEHKDRVS FSDDASYYQD SHSYDSTVDI ASSISRSFNT AGYCGGSSFS FRRSDAGSDR ANMIRTSGAD STRLSISSAA
0201: PSSSSQGSGT DDIESLGDVY VWGEVWTDAA PSDGHTTSSC SKVDVLIPKP LESDVVLDVN QIVCGSRHIA LTTRQGEVFT WGEELGGRLG HGTDTDISRP
0301: KLVESISVTI VDFISCGEFH TCAISASGDL FNWGDGSYHA GLLGYDTGAS HWLPKRVSGP LEGLQVLFVA CGSWHSALIT STGRLYTFGD GTFGALGHGN
0401: RESSAYPKEV EALNGFRTIK VACGVWHSAA IVEATVQTGM NMVSKKLYTW GDGDKNRLGQ GDKEARLIPT CVQALLEHNF HQLACGQNMT VALATSGHVY
0501: TMGSSDNGQL GNPKSDGKQP CLVKDKLAHE LVEEISCGAA HVAVLTSRSE VYTWGMGANG RLGHGDLNDK KAPTIVEALK DRHVKSISCG SNFTTCICIH
0601: KWVSGADQSV CTGCRQAFGF TRKRHNCYNC GLVHCHACSS RKVLKAALAP TPGKPHRVCD SCFLKLKNAD TTTSNANRRN AATRRSIDSR EKPEIRPPRL
0701: VATPSAEPVK YMEVKVAKND MKSADSIMKA SQASALLQFK DLGFAAQFGG LQPMGMSPSV AISPAIPSFS VAPPSAYTKK AKSPPASAIP QSCKVDVDHL
0801: QKSNDLLNQE LLRLQSQVED LKQKCEAQHE QLQKSDKKAK SVASMATEES SKRNAAVEFV KFLDHELKGI VDKLPVDAAD SMKALQMKTQ SLLREQSGHP
0901: SELMNPMERD HLHLSSGGSG RYDLVTHKSG GVGYLTMSQD GSSASGSAIS ITSESPSHRF MENSAKAHGD FAPKHGTHGE VQLIEQFEPG VYVTLIQLKD
1001: GTKVFKRVRF SKRRFAENQA EEWWRENQER VFKKYSHPTH APHGNTTSSH EEEHHS
0101: EVEVWFSALE GLINSCHRNS SVDEHKDRVS FSDDASYYQD SHSYDSTVDI ASSISRSFNT AGYCGGSSFS FRRSDAGSDR ANMIRTSGAD STRLSISSAA
0201: PSSSSQGSGT DDIESLGDVY VWGEVWTDAA PSDGHTTSSC SKVDVLIPKP LESDVVLDVN QIVCGSRHIA LTTRQGEVFT WGEELGGRLG HGTDTDISRP
0301: KLVESISVTI VDFISCGEFH TCAISASGDL FNWGDGSYHA GLLGYDTGAS HWLPKRVSGP LEGLQVLFVA CGSWHSALIT STGRLYTFGD GTFGALGHGN
0401: RESSAYPKEV EALNGFRTIK VACGVWHSAA IVEATVQTGM NMVSKKLYTW GDGDKNRLGQ GDKEARLIPT CVQALLEHNF HQLACGQNMT VALATSGHVY
0501: TMGSSDNGQL GNPKSDGKQP CLVKDKLAHE LVEEISCGAA HVAVLTSRSE VYTWGMGANG RLGHGDLNDK KAPTIVEALK DRHVKSISCG SNFTTCICIH
0601: KWVSGADQSV CTGCRQAFGF TRKRHNCYNC GLVHCHACSS RKVLKAALAP TPGKPHRVCD SCFLKLKNAD TTTSNANRRN AATRRSIDSR EKPEIRPPRL
0701: VATPSAEPVK YMEVKVAKND MKSADSIMKA SQASALLQFK DLGFAAQFGG LQPMGMSPSV AISPAIPSFS VAPPSAYTKK AKSPPASAIP QSCKVDVDHL
0801: QKSNDLLNQE LLRLQSQVED LKQKCEAQHE QLQKSDKKAK SVASMATEES SKRNAAVEFV KFLDHELKGI VDKLPVDAAD SMKALQMKTQ SLLREQSGHP
0901: SELMNPMERD HLHLSSGGSG RYDLVTHKSG GVGYLTMSQD GSSASGSAIS ITSESPSHRF MENSAKAHGD FAPKHGTHGE VQLIEQFEPG VYVTLIQLKD
1001: GTKVFKRVRF SKRRFAENQA EEWWRENQER VFKKYSHPTH APHGNTTSSH EEEHHS
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.