CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043280_P001	Maize	cytosol	89.85	88.97
Os01t0777800-01	Rice	cytosol	74.75	75.31
TraesCS3B01G347100.2	Wheat	cytosol	75.25	74.69
TraesCS3A01G319000.1	Wheat	cytosol	75.25	74.15
TraesCS3D01G312300.1	Wheat	cytosol	74.5	73.96
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	73.51	65.42
GSMUA_Achr6P29750_001	Banana	cytosol	54.46	55.42
VIT_01s0026g01520.t01	Wine grape	cytosol	49.01	50.0
CDY46423	Canola	cytosol	46.04	49.08
Solyc05g006940.2.1	Tomato	cytosol	47.77	48.98
AT1G27060.1	Thale cress	cytosol	46.53	48.7
PGSC0003DMT400045467	Potato	cytosol	47.77	48.61
Bra016304.1-P	Field mustard	cytosol	44.31	48.51
CDY16215	Canola	cytosol	46.29	48.45
CDY69131	Canola	cytosol	38.12	47.98
Bra024664.1-P	Field mustard	cytosol	42.08	47.35
KRH74759	Soybean	nucleus	45.79	32.86
KRH69375	Soybean	nucleus	45.54	31.13
CDY14709	Canola	nucleus	45.79	26.77
KXG25196	Sorghum	cytosol	24.75	25.58
EES09892	Sorghum	mitochondrion	26.24	25.36
EES10837	Sorghum	cytosol	23.02	20.99
EER97183	Sorghum	mitochondrion	21.29	19.91
KXG35074	Sorghum	cytosol	23.51	19.67
OQU91404	Sorghum	cytosol	21.53	17.98
EES07101	Sorghum	cytosol, plastid	18.81	14.21
KXG26580	Sorghum	cytosol	18.56	13.97
EES12399	Sorghum	cytosol, plastid	18.07	13.8
KXG34192	Sorghum	cytosol	26.98	11.95
KXG34127	Sorghum	cytosol	26.73	11.71
EES18851	Sorghum	cytosol, plastid	25.5	11.24
EES19890	Sorghum	cytosol	28.22	11.18
EES13137	Sorghum	cytosol	28.22	10.71
EES01332	Sorghum	cytosol	27.48	10.51
KXG26989	Sorghum	cytosol	24.75	9.37
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	24.5	9.23

Protein Annotations

EnsemblPlants:OQU87663	EnsemblPlantsGene:SORBI_3003G315332	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF303	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ProteinID:OQU87663	ProteinID:OQU87663.1	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0009DC8401
UniProt:A0A1W0VZW6	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:64317904..64322263

Molecular Weight (calculated)

43503.8 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.307

Length

404 amino acids

Sequence
(BLAST)

001: MAAAALEERR WREPEDEAAA DWAWSWGAGT DGQLGNGGFD DHHLPQPLLL PTRCRGRVSF VAGGGAHAIA LTSDGEVFTW GRGTHGQLGH GNLDNIPHPK
101: LVKFLENHTI TCVSAGWNHS GFATDSGQLF MCGDGSFGQL GTGDNLSRNF PFEVAYFNGR YIEKLAFGMR HSLVLLKDNS VYGFGSARRG QVGKCVSRNQ
201: KTDNVPKLID GFPNCKIVNI YANGDHSAAV DESGHLYIWG RPLIGEDDDD QPRRILPSLS VSQVALGWHH ALVLSAGELY TLGVYRHQKC DLPGSGNVLV
301: QQSNTRATSS SHDRSSSLSM LETVPFIDGE HVVQIASGTE HSALVTDKGS VFTWGWGEHG QLGLGDTSDH VAPQRVDIGD NGQRMSGSLA VYCGSGFTVA
401: VKLP

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.