Factsheet for Bra024664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16215	Canola	cytosol	96.66	89.9
Bra016304.1-P	Field mustard	cytosol	79.11	76.96
AT1G27060.1	Thale cress	cytosol	79.94	74.35
VIT_01s0026g01520.t01	Wine grape	cytosol	57.38	52.02
Solyc05g006940.2.1	Tomato	cytosol	55.99	51.02
PGSC0003DMT400045467	Potato	cytosol	55.99	50.63
GSMUA_Achr6P29750_001	Banana	cytosol	49.86	45.09
TraesCS3D01G312300.1	Wheat	cytosol	47.91	42.26
Zm00001d043280_P001	Maize	cytosol	47.91	42.16
Os01t0777800-01	Rice	cytosol	47.08	42.14
OQU87663	Sorghum	cytosol	47.35	42.08
TraesCS3B01G347100.2	Wheat	cytosol	47.35	41.77
TraesCS3A01G319000.1	Wheat	cytosol	47.08	41.22
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	48.19	38.11
KRH74759	Soybean	nucleus	57.1	36.41
KRH69375	Soybean	nucleus	57.94	35.19
Bra008654.1-P	Field mustard	cytosol	24.79	22.42
Bra021435.1-P	Field mustard	cytosol	23.96	21.94
Bra028647.1-P	Field mustard	mitochondrion	26.18	21.51
Bra024242.1-P	Field mustard	cytosol	24.23	21.17
Bra037755.1-P	Field mustard	cytosol	23.68	20.43
Bra029198.1-P	Field mustard	cytosol	23.4	20.39
Bra039169.1-P	Field mustard	cytosol	22.28	16.99
Bra013002.1-P	Field mustard	mitochondrion	19.78	16.03
Bra004253.1-P	Field mustard	plastid	21.73	15.06
Bra004074.1-P	Field mustard	cytosol, plastid	21.17	14.64
Bra017335.1-P	Field mustard	cytosol	20.89	14.12
Bra025182.1-P	Field mustard	cytosol	20.61	13.99
Bra027244.1-P	Field mustard	cytosol	18.94	13.88
Bra036349.1-P	Field mustard	cytosol, plastid	20.33	13.3
Bra008895.1-P	Field mustard	nucleus	31.75	10.71
Bra023740.1-P	Field mustard	cytosol	31.48	10.6
Bra006504.1-P	Field mustard	cytosol	31.75	10.34
Bra023374.1-P	Field mustard	nucleus	31.48	10.16
Bra019511.1-P	Field mustard	cytosol	27.02	10.14
Bra038181.1-P	Field mustard	cytosol	28.13	10.08
Bra002235.1-P	Field mustard	nucleus	31.2	10.05
Bra015708.1-P	Field mustard	cytosol	28.41	9.5
Bra003698.1-P	Field mustard	mitochondrion	28.13	9.38
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	29.8	9.24
Bra016214.1-P	Field mustard	cytosol	26.74	9.14
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	19.78	8.64
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	30.36	8.58

Protein Annotations

EnsemblPlants:Bra024664.1	EnsemblPlants:Bra024664.1-P	EnsemblPlantsGene:Bra024664	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PFAM:PF00415	PFAM:PF13540	PFscan:PS50012	PRINTS:PR00633
ScanProsite:PS00626	SUPFAM:SSF50985	UniParc:UPI0002542129	UniProt:M4E7A9	MapMan:35.1	:

Description

AT1G27060 (E=5e-109) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA09:+:23716111..23717769

Molecular Weight (calculated)

37922.7 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.136

Length

359 amino acids

Sequence
(BLAST)

001: MAEHGGITPA PADEEEQVWS WGAGTDGQLG TAKLKDEHIP QLLSLTSLAS ISMLACGGAH VIALTSGGKV LTWGRGNSGQ LGHGDMLDSS LPKPVSFFDD
101: YVVTQASAGW SHSGFVSAKV SYFADKSVKM VACGMRHSLV LFAGNQVCGF GSGKRGQLGF SSDKTKSLVN LPCLVSGLED VEIVRIAANG DHSAAISANG
201: QMFSWGRGFC GSPDVQTPHC FHSSLSFRDV ALGWNHALLL TADGEVSKLG NTLNKQFKKQ QVQVDSSEPL LEKVAGFDGV KVVQIAAGAE HSAAITESGE
301: VQTWGWGEHG QLGLGNTNDH NNPQLVSLGS IDQRTQETKV YCGSGFTYVV RRIQKLSSS

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.