Factsheet for PGSC0003DMT400045467

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006940.2.1	Tomato	cytosol	93.95	94.67
VIT_01s0026g01520.t01	Wine grape	cytosol	59.95	60.1
CDY69131	Canola	cytosol	46.35	57.32
CDY16215	Canola	cytosol	55.42	56.99
CDY46423	Canola	cytosol	53.65	56.2
Bra016304.1-P	Field mustard	cytosol	52.14	56.1
Bra024664.1-P	Field mustard	cytosol	50.63	55.99
AT1G27060.1	Thale cress	cytosol	54.16	55.7
GSMUA_Achr6P29750_001	Banana	cytosol	52.14	52.14
TraesCS3B01G347100.2	Wheat	cytosol	49.87	48.65
TraesCS3A01G319000.1	Wheat	cytosol	49.87	48.29
Os01t0777800-01	Rice	cytosol	48.36	47.88
OQU87663	Sorghum	cytosol	48.61	47.77
TraesCS3D01G312300.1	Wheat	cytosol	48.87	47.67
Zm00001d043280_P001	Maize	cytosol	48.36	47.06
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	48.61	42.51
KRH74759	Soybean	nucleus	56.17	39.61
KRH69375	Soybean	nucleus	57.43	38.58
CDY14709	Canola	nucleus	53.9	30.97
PGSC0003DMT400032945	Potato	extracellular	23.93	24.3
PGSC0003DMT400003817	Potato	cytosol	22.67	23.56
PGSC0003DMT400032346	Potato	plasma membrane	23.93	19.71
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	8.31	19.08
PGSC0003DMT400003726	Potato	cytosol	21.91	18.67
PGSC0003DMT400027900	Potato	cytosol	21.41	15.95
PGSC0003DMT400034994	Potato	cytosol	30.23	11.59
PGSC0003DMT400059356	Potato	cytosol	28.97	11.15
PGSC0003DMT400043094	Potato	nucleus	26.7	9.85
PGSC0003DMT400002081	Potato	cytosol	26.45	9.33
PGSC0003DMT400001620	Potato	cytosol	6.3	6.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400045467	EnsemblPlantsGene:PGSC0003DMG400017638	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00415	PFscan:PS50012	PGSC:PGSC0003DMG400017638
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000295C8CB	UniProt:M1BHP8
MapMan:35.1	:	:	:	:	:

Description

Regulator of chromosome condensation family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017638]

Coordinates

chr5:+:6085496..6091892

Molecular Weight (calculated)

42938.4 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.327

Length

397 amino acids

Sequence
(BLAST)

001: MEETERIKSR EEEEEEEEIW SWGAGTEGQL GTGKLQDEHK PQLIHSLSSF GPISHLSCGG AHVIALTPGG RVLTWGRGNS GQLGHGEMVN CLHPKSVESL
101: EGAFITHASA GWNHSGFVSD TGCVFTCGDG SFGQLGHGDY ISRCSPVQVL HFKARHVEQI ACGMRHSLVL LKGDTEDLIY GFGSGKRGQL GISDDKQKSV
201: STPQVTLGFE NVKIRSVNAN GDHSTAISMN GHLYIWGRAF HGAPDVYTPR RVTADLLFSQ VALGWNHALV LTGDGEVYML GRYNYNVPTG AQKANGMKHI
301: SEDEGVMQRV LDFNSKKVVQ IGAGAEHSAV VTADDGSVMT WGWGEHGQLG LGDTNDQTSP RVVSLCNEQS RKPCVGRVYC GSGFTFVIRT YTLNSSF

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.