Factsheet for PGSC0003DMT400003817

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032346	Potato	plasma membrane	97.12	76.97
Solyc07g063300.2.1	Tomato	plasma membrane	97.38	76.54
VIT_19s0014g03080.t01	Wine grape	cytosol	79.06	61.38
KRH22127	Soybean	cytosol	76.44	60.21
GSMUA_Achr5P12060_001	Banana	mitochondrion	70.68	59.73
CDY56827	Canola	cytosol	72.77	58.28
CDX97668	Canola	cytosol	72.77	58.28
AT3G15430.2	Thale cress	cytosol	73.56	57.58
KRH27216	Soybean	cytosol	75.13	56.83
Bra027244.1-P	Field mustard	cytosol	72.77	56.73
Zm00001d019595_P001	Maize	cytosol	70.94	56.11
KXG35074	Sorghum	cytosol	70.94	56.11
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.73	55.69
Zm00001d005395_P001	Maize	cytosol	69.9	55.28
TraesCS2D01G241400.2	Wheat	cytosol	69.9	55.17
TraesCS2B01G254900.2	Wheat	cytosol	69.37	54.75
KRH49501	Soybean	cytosol	24.61	54.34
TraesCS2A01G236300.4	Wheat	cytosol	69.63	54.18
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.28	52.24
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	72.25	33.58
CDY20113	Canola	endoplasmic reticulum, extracellular	71.99	33.33
CDY21840	Canola	endoplasmic reticulum, extracellular	71.99	33.29
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	12.57	27.75
PGSC0003DMT400045467	Potato	cytosol	23.56	22.67
PGSC0003DMT400032945	Potato	extracellular	22.77	22.25
PGSC0003DMT400027900	Potato	cytosol	30.37	21.76
PGSC0003DMT400003726	Potato	cytosol	21.47	17.6
PGSC0003DMT400043094	Potato	nucleus	27.75	9.85
PGSC0003DMT400034994	Potato	cytosol	26.18	9.66
PGSC0003DMT400059356	Potato	cytosol	25.65	9.51
PGSC0003DMT400002081	Potato	cytosol	27.49	9.33
PGSC0003DMT400001620	Potato	cytosol	5.5	5.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400003817	EnsemblPlantsGene:PGSC0003DMG400001512	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	PFAM:PF00415	PFscan:PS50012	PGSC:PGSC0003DMG400001512
PRINTS:PR00633	ScanProsite:PS00626	SUPFAM:SSF50985	UniParc:UPI000296DF79	UniProt:M0ZMD4	MapMan:35.1

Description

Ran GTPase binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001512]

Coordinates

chr2:+:38374216..38379572

Molecular Weight (calculated)

40853.3 Da

IEP (calculated)

7.113

GRAVY (calculated)

-0.129

Length

382 amino acids

Sequence
(BLAST)

001: MAVEQSSDMV ETSAGNMQIR SGRYHTLLIN DSAAYSCGSS LCGVLGHGPE TTQCVEFTRI NFPVPVQVAQ VSASHNHAAF VTGSGQVFTC GDNSSYCCGH
101: SDTGRPIFRP RMVEALKNIP VKQVAAGLSF TMFLTRKGHV FTCGTNAHGQ LGHGDTSDRP TPTCIELLAS IGSIVQIAAG PSYALAVSDD GTLYSFGSGT
201: NFCLGHGEQQ NELQPRAIQS FKRKGINVAR VSAGDEHVVA LDSTGYVYTW GKGYCGALGH DDEIDKTTPS HLTSLKSHLA VQVCASKRKT FVLVDNGSVY
301: GFGWMGFGSL GFLDRGASDK VLKPRILESL RSHHISQIST GLYHTVVVTN CGRVFGFGDN ERAQLGHDAV RGCLEPTEML HE

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.