Factsheet for Bra027244.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 4
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97668	Canola	cytosol	96.94	99.58
CDY56827	Canola	cytosol	96.53	99.16
AT3G15430.2	Thale cress	cytosol	91.02	91.39
PGSC0003DMT400003817	Potato	cytosol	56.73	72.77
KRH22127	Soybean	cytosol	70.0	70.72
VIT_19s0014g03080.t01	Wine grape	cytosol	70.41	70.12
PGSC0003DMT400032346	Potato	plasma membrane	67.55	68.67
Solyc07g063300.2.1	Tomato	plasma membrane	67.96	68.52
KRH27216	Soybean	cytosol	69.59	67.52
GSMUA_Achr5P12060_001	Banana	mitochondrion	58.57	63.5
Zm00001d019595_P001	Maize	cytosol	62.24	63.15
KXG35074	Sorghum	cytosol	62.24	63.15
Zm00001d005395_P001	Maize	cytosol	61.63	62.53
TraesCS2D01G241400.2	Wheat	cytosol	61.63	62.4
TraesCS2B01G254900.2	Wheat	cytosol	61.63	62.4
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.84	61.59
TraesCS2A01G236300.4	Wheat	cytosol	61.22	61.1
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.18	58.94
KRH49501	Soybean	cytosol	19.8	56.07
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	92.04	54.87
Bra024242.1-P	Field mustard	cytosol	21.63	25.79
Bra004074.1-P	Field mustard	cytosol, plastid	26.94	25.43
Bra004253.1-P	Field mustard	plastid	26.73	25.29
Bra029198.1-P	Field mustard	cytosol	21.02	25.0
Bra037755.1-P	Field mustard	cytosol	21.22	25.0
Bra017335.1-P	Field mustard	cytosol	26.94	24.86
Bra025182.1-P	Field mustard	cytosol	26.53	24.57
Bra021435.1-P	Field mustard	cytosol	18.98	23.72
Bra036349.1-P	Field mustard	cytosol, plastid	26.12	23.32
Bra008654.1-P	Field mustard	cytosol	18.78	23.17
Bra016304.1-P	Field mustard	cytosol	17.14	22.76
Bra028647.1-P	Field mustard	mitochondrion	18.78	21.05
Bra039169.1-P	Field mustard	cytosol	18.57	19.32
Bra024664.1-P	Field mustard	cytosol	13.88	18.94
Bra013002.1-P	Field mustard	mitochondrion	16.53	18.28
Bra016214.1-P	Field mustard	cytosol	26.53	12.38
Bra015708.1-P	Field mustard	cytosol	26.94	12.29
Bra003698.1-P	Field mustard	mitochondrion	26.53	12.07
Bra023740.1-P	Field mustard	cytosol	26.12	12.01
Bra008895.1-P	Field mustard	nucleus	25.92	11.94
Bra019511.1-P	Field mustard	cytosol	23.27	11.91
Bra006504.1-P	Field mustard	cytosol	25.71	11.42
Bra023374.1-P	Field mustard	nucleus	25.71	11.33
Bra002235.1-P	Field mustard	nucleus	25.51	11.22
Bra038181.1-P	Field mustard	cytosol	22.86	11.18
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.31	10.71
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.31	9.76

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	EnsemblPlantsGene:Bra027244	EnsemblPlants:Bra027244.1	EnsemblPlants:Bra027244.1-P	InterPro:IPR000408
InterPro:IPR009091	UniProt:M4EEN2	PFAM:PF00415	PFAM:PF13540	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI0002547A27	SEG:seg	:	:	:	:

Description

AT3G15430 (E=8e-261) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA05:-:19922822..19924718

Molecular Weight (calculated)

53133.6 Da

IEP (calculated)

7.947

GRAVY (calculated)

-0.034

Length

490 amino acids

Sequence
(BLAST)

001: MAGGNWVVSF EDLPCHLILE VLTSGRLNAF DLLSLELTSK KVFGGSCFGL YPFKFRSLAD YAASQLCSVH PVYVGMGLAT QKELFANCEG NWKRLLRFLQ
101: SVEQSSDMVE TSAGNMQVTT GRYHTLLINN SKVYSCGSSL SGVLAHGPET TQCVAFTPVE FPFSAQVAQV SATQNHSAFV LQSGEVLTCG DNSSHCCGHL
201: DISRPIFRPK LVEALKGTPC KQVAAGLHFT VFLSREGRVF TCGSNTHGQL GHGDTLDRPV PKAVEFLQSV GPVVQISTGP SYVLAVTQDG SVYSFGSGSS
301: FCLGHGEQQD EHQPRVIQAF KRKGIHILRV SAGDEHAVAL DSNGRVYTWG KGYCGALGHG DENDKITPQV LVSLNNCLAV QVCARKRKTF VLVEGGLLYG
401: FGWMGFGSLG FPDRGVSDKV LRPRVLECLK QHRVCQVSTG LYHTIVVTQG GRIFGFGDNE RAQLGHDSLR GCLEPTEIFL HCGRSRSRLC

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.