Factsheet for VIT_19s0014g03080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003817	Potato	cytosol	61.38	79.06
KRH22127	Soybean	cytosol	76.42	77.53
PGSC0003DMT400032346	Potato	plasma membrane	74.19	75.73
Solyc07g063300.2.1	Tomato	plasma membrane	74.39	75.31
KRH27216	Soybean	cytosol	76.02	74.06
GSMUA_Achr5P12060_001	Banana	mitochondrion	66.26	72.12
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	71.95	71.95
CDX97668	Canola	cytosol	68.9	71.07
AT3G15430.2	Thale cress	cytosol	70.33	70.9
CDY56827	Canola	cytosol	68.7	70.86
Bra027244.1-P	Field mustard	cytosol	70.12	70.41
KXG35074	Sorghum	cytosol	68.5	69.77
Zm00001d019595_P001	Maize	cytosol	68.29	69.57
Zm00001d005395_P001	Maize	cytosol	67.89	69.15
TraesCS2D01G241400.2	Wheat	cytosol	67.68	68.8
TraesCS2B01G254900.2	Wheat	cytosol	67.07	68.18
TraesCS2A01G236300.4	Wheat	cytosol	67.48	67.62
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.28	67.28
KRH49501	Soybean	cytosol	20.73	58.96
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	70.12	41.97
CDY20113	Canola	endoplasmic reticulum, extracellular	70.12	41.82
CDY21840	Canola	endoplasmic reticulum, extracellular	69.92	41.65
VIT_07s0031g02560.t01	Wine grape	cytosol	23.98	26.52
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	9.55	25.27
VIT_14s0006g03240.t01	Wine grape	cytosol	20.12	25.06
VIT_01s0026g01520.t01	Wine grape	cytosol	18.9	23.48
VIT_01s0137g00230.t01	Wine grape	cytosol	25.0	23.03
VIT_07s0031g02850.t01	Wine grape	mitochondrion	18.7	21.9
VIT_14s0083g01020.t01	Wine grape	cytosol	17.07	17.57
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	10.77	16.11
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	21.34	15.2
VIT_01s0026g02170.t01	Wine grape	cytosol	26.22	14.21
VIT_05s0049g01140.t01	Wine grape	cytosol	27.44	12.72
VIT_06s0009g03550.t01	Wine grape	nucleus	27.64	12.29
VIT_18s0166g00210.t01	Wine grape	cytosol	27.85	12.13
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	26.83	12.02
VIT_04s0079g00290.t01	Wine grape	cytosol	20.93	10.25

Protein Annotations

EntrezGene:100262257	wikigene:100262257	Gene3D:2.130.10.30	MapMan:35.1	EMBL:AM430396	ProteinID:CAN60415
ProteinID:CAN60415.1	ProteinID:CBI20332	ProteinID:CBI20332.3	UniProt:E0CSN3	EMBL:FN595229	InterPro:IPR000408
InterPro:IPR009091	EntrezGene:LOC100262257	wikigene:LOC100262257	PFAM:PF00415	PFAM:PF13540	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SUPFAM:SSF50985	TIGR:TC67276	UniParc:UPI00015C7A81	ArrayExpress:VIT_19s0014g03080	EnsemblPlantsGene:VIT_19s0014g03080	EnsemblPlants:VIT_19s0014g03080.t01
unigene:Vvi.17984	RefSeq:XP_002284809	RefSeq:XP_002284809.1	RefSeq:XP_010644214.1	:	:

Description

No Description!

Coordinates

chr19:+:3256119..3262773

Molecular Weight (calculated)

53457.5 Da

IEP (calculated)

7.584

GRAVY (calculated)

-0.092

Length

492 amino acids

Sequence
(BLAST)

001: MANRYWSVSF EELPSHLILE ILSSGRLSAV DLVCLELTSR TFGASHGLYP HKFRSLVDFA AFQLCGSHPI YAALSLNAQK DLFDRCGENW KRVLRFLQSV
101: EQSSYISETS AGNMQITTGR YHTLLIKDSS VYSCGSSLCG VLGHGPETTQ CVAFSRINFP PLAHVAQVSA SHNHAAFVMQ SGEVFTCGDN SSFCCGHGDT
201: VRPIFRPRLV EALKGVPCKQ VAAGLSFTVF LTMKGHVYTC GTNTHGQLGH GDTVDRRTPK IVELLEGVGP VVQIAAGPSY AMAVTDDGTV HSFGSGSNFC
301: LGHGEQHNEL RPRAIQSFRR KTIHVVRISA GDEHVVALDS SGFVYTWGKG YCGALGHGDE IDKTTPEILS SLKSHLAVQV CARKRKTFVL VDTGSVYGFG
401: WMGFGSLGFP DRGASDKVMR PWILDSLRGH YISQISTGLY HTVAVNNKGQ IFGFGDNERA QLGHDTLRGC PVPTEIFVQE ATDDAGRVSE SR

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.