Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66504 | Canola | cytosol | 56.17 | 72.24 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 68.24 | 67.6 |
| PGSC0003DMT400034994 | Potato | cytosol | 65.79 | 67.44 |
| AT3G23270.2 | Thale cress | cytosol | 65.13 | 65.56 |
| CDX85076 | Canola | cytosol | 63.81 | 65.22 |
| Bra023740.1-P | Field mustard | cytosol | 64.56 | 64.26 |
| CDY12764 | Canola | cytosol | 62.96 | 63.74 |
| KRH69117 | Soybean | cytosol | 62.49 | 61.5 |
| KRH00393 | Soybean | cytosol | 61.83 | 61.37 |
| KRH31700 | Soybean | cytosol | 62.11 | 61.13 |
| CDX77534 | Canola | cytosol | 63.81 | 60.94 |
| KRH40796 | Soybean | cytosol | 42.79 | 60.53 |
| AT4G14368.1 | Thale cress | cytosol | 63.05 | 60.49 |
| CDY49416 | Canola | cytosol | 63.05 | 59.79 |
| Os05t0545200-00 | Rice | cytosol | 54.57 | 57.1 |
| VIT_12s0057g00540.t01 | Wine grape | cytosol, mitochondrion | 9.99 | 56.99 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 55.89 | 56.8 |
| Zm00001d011660_P003 | Maize | cytosol | 56.17 | 56.39 |
| EES19890 | Sorghum | cytosol | 54.1 | 56.27 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 55.61 | 56.24 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 55.7 | 56.23 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 55.8 | 56.22 |
| Os01t0700200-01 | Rice | cytosol | 55.23 | 56.13 |
| EES01332 | Sorghum | cytosol | 55.8 | 56.06 |
| Zm00001d038882_P002 | Maize | cytosol | 54.67 | 54.98 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 57.68 | 54.21 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 62.3 | 52.05 |
| VIT_06s0009g03550.t01 | Wine grape | nucleus | 49.67 | 47.61 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 46.75 | 47.42 |
| VIT_01s0026g02170.t01 | Wine grape | cytosol | 40.25 | 47.03 |
| VIT_13s0067g03380.t01 | Wine grape | endoplasmic reticulum, extracellular | 47.22 | 45.63 |
| VIT_17s0000g05980.t01 | Wine grape | endoplasmic reticulum | 27.99 | 42.98 |
| VIT_04s0079g00290.t01 | Wine grape | cytosol | 35.34 | 37.31 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 13.95 | 33.26 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 11.97 | 32.07 |
| VIT_07s0031g02850.t01 | Wine grape | mitochondrion | 11.69 | 29.52 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 10.37 | 27.85 |
| VIT_19s0014g03080.t01 | Wine grape | cytosol | 12.72 | 27.44 |
| VIT_03s0017g02290.t01 | Wine grape | endoplasmic reticulum, golgi | 8.48 | 27.36 |
| VIT_01s0137g00230.t01 | Wine grape | cytosol | 12.44 | 24.72 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 11.03 | 24.48 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ProteinID:CCB48587 | ProteinID:CCB48587.1 | ncoils:Coil | UniProt:F6H8Q1 | EMBL:FN595496 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR001849 | InterPro:IPR009091 | InterPro:IPR011993 |
| InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 |
| PFAM:PF13713 | PFAM:PF16457 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF87 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI0002108735 |
| ArrayExpress:VIT_05s0049g01140 | EnsemblPlantsGene:VIT_05s0049g01140 | EnsemblPlants:VIT_05s0049g01140.t01 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:8186969..8196949
Molecular Weight (calculated)
115914.0 Da
IEP (calculated)
8.209
GRAVY (calculated)
-0.439
Length
1061 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADPVSYGNS ERDIEQALVT LKKGTQLIKY SRKGKPKFRP FRISTDETTL IWYSHGEERN LKLSSVSRII PGQRTAVFRR YLRPEKDYLS FSLLYNNGER
0101: SLDLICKDKV EAEVWLAGLQ ALISTGQHRN RRTRSDIPDV RISFQHQYIY AYSRDSSLNW ASSDAGSERT NMQLRTSGVD GFRISVSSTP SCSSQGSGPD
0201: DIESLGDVYV WGEVWCDGVL PDGSVSPFPI KIDVLTPKSL ESNVVLDVHQ IACGVRHVAL VTRQGEVFTW GEESGGRLGH GIDNDFSRPH LVEFLAVNNV
0301: DFVACGEYHT CAVSTSGDLF TWGDGTHNAG LLGHGTEVSH WIPKRVSGPL EGLQVLSVAC GTWHSALATS NGKLFTFGDG TFGVLGHGDR ESVPYPREVQ
0401: ILSGLKTIKV ACGVWHTAAI IEVMSQSGTN ISSRKLFTWG DGDKHRLGHG SKETYLLPTC VSALIDYNFH QLACGHTMTV ALTTSGHVFT MGGTAYGQLG
0501: NPLSDGRLPC LVQDKLVGEF VEEISCGAYH VAVLTSRSEV FTWGRGANGR LGHGDTEDRR SPTFVEALKD RNVKSISCGS NFTASICIHK WVSGADQSVC
0601: SGCRQAFGFT RKRHNCYNCG LVHCHACSSK KALKAALAPT PGKPHRVCDP CYAKLKAAEA GDASIFNRKN TVPRRSIDAT IRSDRGEVRS ARILMSPGPI
0701: NYFEFKPARL GPRPDPSPMI QSSQGPSLLK DIAFPSSLSA LQNALKPVIT ASPQTAPPPP PQPAFSRPVS PYSRRPSPPR SAGPVFSRSV IDSLKKTNEL
0801: LNQEVTKLQN QVRSLKQKSE GQDAEIQKLR KNAQEADLLA LEESSKCTVA KEVVKSITTQ LKEMEKQLPP EVYDSETFKS MQTQIEAFLN TSGTQAAEFS
0901: SSLPADLESD QKNAPVTNPL GVEDHVNAAG LTDLTQNGES SVQDSSKLSI SITRDAVPQQ STENGSRSAA KYEGEPESTE QFEPGVYVTF IALKNGTKIF
1001: KRVRFSKRKF GGQQAEEWWK ENKERLLRKY TPPASSSAPT GSSVPPAPTD ESNELAQSSQ T
0101: SLDLICKDKV EAEVWLAGLQ ALISTGQHRN RRTRSDIPDV RISFQHQYIY AYSRDSSLNW ASSDAGSERT NMQLRTSGVD GFRISVSSTP SCSSQGSGPD
0201: DIESLGDVYV WGEVWCDGVL PDGSVSPFPI KIDVLTPKSL ESNVVLDVHQ IACGVRHVAL VTRQGEVFTW GEESGGRLGH GIDNDFSRPH LVEFLAVNNV
0301: DFVACGEYHT CAVSTSGDLF TWGDGTHNAG LLGHGTEVSH WIPKRVSGPL EGLQVLSVAC GTWHSALATS NGKLFTFGDG TFGVLGHGDR ESVPYPREVQ
0401: ILSGLKTIKV ACGVWHTAAI IEVMSQSGTN ISSRKLFTWG DGDKHRLGHG SKETYLLPTC VSALIDYNFH QLACGHTMTV ALTTSGHVFT MGGTAYGQLG
0501: NPLSDGRLPC LVQDKLVGEF VEEISCGAYH VAVLTSRSEV FTWGRGANGR LGHGDTEDRR SPTFVEALKD RNVKSISCGS NFTASICIHK WVSGADQSVC
0601: SGCRQAFGFT RKRHNCYNCG LVHCHACSSK KALKAALAPT PGKPHRVCDP CYAKLKAAEA GDASIFNRKN TVPRRSIDAT IRSDRGEVRS ARILMSPGPI
0701: NYFEFKPARL GPRPDPSPMI QSSQGPSLLK DIAFPSSLSA LQNALKPVIT ASPQTAPPPP PQPAFSRPVS PYSRRPSPPR SAGPVFSRSV IDSLKKTNEL
0801: LNQEVTKLQN QVRSLKQKSE GQDAEIQKLR KNAQEADLLA LEESSKCTVA KEVVKSITTQ LKEMEKQLPP EVYDSETFKS MQTQIEAFLN TSGTQAAEFS
0901: SSLPADLESD QKNAPVTNPL GVEDHVNAAG LTDLTQNGES SVQDSSKLSI SITRDAVPQQ STENGSRSAA KYEGEPESTE QFEPGVYVTF IALKNGTKIF
1001: KRVRFSKRKF GGQQAEEWWK ENKERLLRKY TPPASSSAPT GSSVPPAPTD ESNELAQSSQ T
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.