CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40796	Soybean	cytosol	60.99	86.93
CDY66504	Canola	cytosol	49.77	64.48
KRH69117	Soybean	cytosol	62.49	61.97
VIT_05s0049g01140.t01	Wine grape	cytosol	61.37	61.83
KRH31700	Soybean	cytosol	62.11	61.6
Solyc03g005590.1.1	Tomato	cytosol, plastid	58.56	58.45
CDX85076	Canola	cytosol	56.69	58.38
PGSC0003DMT400034994	Potato	cytosol	56.31	58.16
AT3G23270.2	Thale cress	cytosol	57.25	58.06
KRH08750	Soybean	cytosol	34.52	57.93
CDY12764	Canola	cytosol	56.69	57.82
Bra023740.1-P	Field mustard	cytosol	56.88	57.04
CDX77534	Canola	cytosol	56.88	54.73
AT4G14368.1	Thale cress	cytosol	55.75	53.89
CDY49416	Canola	cytosol	56.22	53.71
EES19890	Sorghum	cytosol	50.61	53.04
Zm00001d011660_P003	Maize	cytosol	52.29	52.89
EES01332	Sorghum	cytosol	52.01	52.65
Os05t0545200-00	Rice	cytosol	49.86	52.56
TraesCS1A01G366800.1	Wheat	cytosol	50.8	52.01
Os01t0700200-01	Rice	cytosol	50.7	51.92
Zm00001d038882_P002	Maize	cytosol	50.8	51.47
TraesCS1B01G384600.1	Wheat	cytosol	50.33	51.29
HORVU1Hr1G078890.1	Barley	cytosol	50.42	51.28
TraesCS1D01G372300.1	Wheat	cytosol	50.51	51.28
KRG91629	Soybean	cytosol	50.98	49.64
KRH35179	Soybean	cytosol	51.82	49.46
KRH70333	Soybean	cytosol	51.54	49.2
KRH65503	Soybean	cytosol, mitochondrion, nucleus	47.99	49.04
KRH30228	Soybean	cytosol	18.33	48.16
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	55.47	46.69
KRH08736	Soybean	endoplasmic reticulum	28.91	44.33
KRG99075	Soybean	nucleus	45.09	43.58
KRH73555	Soybean	nucleus	44.62	43.05
KRH45937	Soybean	nucleus	44.53	42.92
KRH14571	Soybean	nucleus	44.34	42.82
KRH45886	Soybean	nucleus	37.42	42.02
KRH30227	Soybean	cytosol	16.93	40.13
KRG99112	Soybean	cytosol	36.2	39.49
KRG98005	Soybean	cytosol	32.93	32.9
KRH30884	Soybean	cytosol	32.83	32.68
KRH59606	Soybean	cytosol	12.82	31.35
KRH40960	Soybean	cytosol	9.54	30.18
KRH53944	Soybean	plastid	13.19	29.75
KRH63996	Soybean	nucleus	13.38	29.67
KRH63955	Soybean	mitochondrion	11.04	28.3
KRH22127	Soybean	cytosol	12.16	26.8
KRH27216	Soybean	cytosol	12.44	26.34
KRH53977	Soybean	cytosol, mitochondrion, nucleus	7.86	26.25
KRG93861	Soybean	nucleus	9.35	25.32
KRG97505	Soybean	cytosol	12.35	24.67
KRH31377	Soybean	cytosol	12.16	24.48
KRH46563	Soybean	mitochondrion	10.1	24.32
KRH45102	Soybean	cytosol, nucleus, peroxisome	10.57	23.84
KRH59226	Soybean	cytosol	11.79	23.6
KRH01383	Soybean	cytosol	10.2	23.0
KRH49501	Soybean	cytosol	3.55	21.97
KRH74759	Soybean	nucleus	11.32	21.49
KRH69375	Soybean	nucleus	11.32	20.47

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02011440	InterPro:BRX_N
InterPro:Brevis_radix_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G210400	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
UniProt:I1N357	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	EnsemblPlants:KRH00393	ProteinID:KRH00393	ProteinID:KRH00393.1	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50003	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002953917	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:49623839..49631767

Molecular Weight (calculated)

118032.0 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.496

Length

1069 amino acids

Sequence
(BLAST)

0001: MADPASYGSL ERDIEQALIA IKKGTQLIKY SRKTKPKVCP FRLSLDETTL IWISHKKERN LKLSSVSRII PGQRTVVFRR YLQPEKDYLS FSLVYNNGER
0101: TLDLICKDQD EAEVWFTGLK TLISTGKLRR IGSELFNDGA DFIPNGGPFG AALEFAISIS HNKKVSFDFA SREPSLNLAT TDVGLERRAN NMQPRTSIGD
0201: GFRVSVSSTP SVLSTGSGPD DIESLGDVYI WGEVWASGVS PDGFSTQAPS TTDVLIPKPL ESSVVLDVQQ IASGVRHIAL VTRQGEVFTW GEECGGRLGH
0301: GIDRDFGRPQ LVEFLAVTSM DFVACGENHT CAVSTYDDIF SWGDGTYNVG LLGHGTDKGL QVISIACGTW HSALATSNGK LFTFGDGTFG VLGHGNRESI
0401: PYPKEVKFLN GSKTIKVACG VWHTAAIVEV TFQSNSNVSS RKLFTWGDGD KYRLGHGNKG TYLQPTCVSA LIKYNFHQIA CGHTMTVALT TSGHVFTMGS
0501: NENGQLGNRL ADEKVPILVQ DKLVGEFVEE IACGSHHVAA LTSRSELYTW GKGANGRLGH GDIEDRKSPT LVESLRDRHV KNISCGSNFT SCICIHKWVS
0601: GVDQSVCTGC RQPFGFTRKR HNCYNCGLVH CHGCSSKKVL KASLAPTPGK PHRVCDSCYN KLKAVEACAS SNLHRKMTTT PRYSIDGRER FGQGEVKSSR
0701: LILPPITEPM KFHQIMANKM GNKHDYSSMS PTSQVPSLLQ LNDIAFGNSI SSTQNVLKSA IAPSPTPTPP VNQRPASPYS RRASPPRSRA SGFSRSLVDS
0801: LRKTNELLNQ EVSKMQNQIR SSKLRNDMEI QKLQKTITEA TSFAVEESSK HKAMKEFFES TVDQMKEMIE KLPPDVLDSE NWKIMLTRAE DFLKEKSEFE
0901: TPSNVKSQQQ HELNTPNSYS SSSKLQEHGI EENNETVGVD PSSQDEGNVQ VSNSSSLSNN EASMPSQNDS KSQHSSRPGK EGEMQVMEQF EPGVHVTLIV
1001: KPGGVRIFKR VKFSKRRFHE HQAEEWWSKN KDRVLRKYST PQATNFEGIR SSNTLPPPPT EENIEAMSS

Best Arabidopsis Sequence Match ( AT4G14368.2 )
(BLAST)

0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.