CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97505	Soybean	cytosol	97.36	96.64
VIT_01s0137g00230.t01	Wine grape	cytosol	87.01	86.52
PGSC0003DMT400027900	Potato	cytosol	82.67	82.36
Solyc05g014030.2.1	Tomato	cytosol	82.49	82.18
KRH59226	Soybean	cytosol	81.92	81.46
GSMUA_AchrUn_...	Banana	cytosol, plastid	80.79	79.89
CDY04192	Canola	cytosol	73.82	79.67
CDY39172	Canola	cytosol	73.82	79.67
CDX83586	Canola	cytosol, plastid	78.91	79.21
Bra025182.1-P	Field mustard	cytosol	78.72	79.02
CDY13609	Canola	cytosol	78.72	79.02
AT3G26100.5	Thale cress	cytosol, plastid	79.1	78.95
Bra017335.1-P	Field mustard	cytosol	78.72	78.72
Os12t0284000-01	Rice	cytosol	79.1	78.65
HORVU5Hr1G034530.6	Barley	cytosol	77.59	77.15
CDX99731	Canola	cytosol, plastid	77.59	77.01
GSMUA_Achr9P02110_001	Banana	plastid	76.84	75.84
Bra036349.1-P	Field mustard	cytosol, plastid	77.59	75.05
CDY40988	Canola	cytosol, plastid	77.4	74.86
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	23.73	72.83
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	29.19	69.51
KRH22127	Soybean	cytosol	25.05	27.42
KRH27216	Soybean	cytosol	25.24	26.53
KRG93861	Soybean	nucleus	18.64	25.06
KRH40960	Soybean	cytosol	14.88	23.37
KRH59606	Soybean	cytosol	19.02	23.11
KRH49501	Soybean	cytosol	7.34	22.54
KRH08750	Soybean	cytosol	26.18	21.82
KRH53944	Soybean	plastid	19.02	21.31
KRH63996	Soybean	nucleus	19.21	21.16
KRH63955	Soybean	mitochondrion	16.57	21.1
KRH30228	Soybean	cytosol	16.01	20.88
KRH01383	Soybean	cytosol	18.27	20.46
KRH53977	Soybean	cytosol, mitochondrion, nucleus	12.24	20.31
KRH45102	Soybean	cytosol, nucleus, peroxisome	18.08	20.25
KRH46563	Soybean	mitochondrion	14.5	17.34
KRH74759	Soybean	nucleus	17.51	16.52
KRH69375	Soybean	nucleus	17.51	15.74
KRH45886	Soybean	nucleus	24.48	13.66
KRG99075	Soybean	nucleus	27.31	13.11
KRH73555	Soybean	nucleus	26.74	12.82
KRH45937	Soybean	nucleus	26.74	12.8
KRH14571	Soybean	nucleus	26.37	12.65
KRH31700	Soybean	cytosol	25.24	12.43
KRH69117	Soybean	cytosol	25.24	12.43
KRG91629	Soybean	cytosol	25.61	12.39
KRH35179	Soybean	cytosol	25.99	12.32
KRG99112	Soybean	cytosol	22.6	12.24
KRH00393	Soybean	cytosol	24.48	12.16
KRH70333	Soybean	cytosol	25.61	12.14
KRH30884	Soybean	cytosol	24.29	12.01
KRG98005	Soybean	cytosol	23.92	11.87
KRH40796	Soybean	cytosol	15.25	10.8
KRH65503	Soybean	cytosol, mitochondrion, nucleus	19.4	9.85
KRH08736	Soybean	endoplasmic reticulum	10.55	8.03
KRH30227	Soybean	cytosol	3.77	4.43

Protein Annotations

EMBL:ACUP02007144	EnsemblPlants:KRH31377	EnsemblPlantsGene:GLYMA_11G245000	EntrezGene:100815718	Gene3D:2.130.10.30	InterPro:IPR000408
InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415
PFscan:PS50012	PRINTS:PR00633	ProteinID:KRH31376.1	ProteinID:KRH31377	ProteinID:KRH31377.1	ScanProsite:PS00626
SEG:seg	SUPFAM:SSF50985	UniParc:UPI00023CD042	UniProt:I1LNE3	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr11:-:33873103..33877947

Molecular Weight (calculated)

57158.7 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.163

Length

531 amino acids

Sequence
(BLAST)

001: MMDATTSGTP TIQYHNIPDQ PITAIIATPL PTFQRQQRHC FGDSTPGEFP LSANPSIVLH VLTACNLDPQ DLAKLEATCS FFRQPANFAP DSDLSLSELA
101: ALDMCQKRAI FKPMTTEQRQ DLKLRCGGSW KLVLRYLMAG EACCRREKSQ AIAGPGHSIA VTSKGIVYSF GSNSSGQLGH GTTEEEWRPR PIRTLQGIRI
201: IQAAAGAGRT MLVSDSGQVY AFGEAEYGVQ GSKTVAAPQI VESLKNIFVV QAAIGNFFTA VLSREGRVYT FSWGSDEKLG HHTDQSDVEP HPLLGALENI
301: PVVQIAAGYC YLLCLACQPS GMSVYSVGCG LGGKLGHGSR TDEEYPRLIE QFGLLNLQPM VVAAGAWHAA VVGRDGRVCT WGWGRYGCLG HGNEECESVP
401: KVVEALSNVK AVHVATGDYT TFVVSDDGDV YSFGCGQSAS LGHNAAGNDE QGNRHAKVLD PELVTSLKQI NERVVQISLT NCNYWNAHTF ALTESGKLYA
501: FGAGDKGQLG IELVANQTER GNPERVEIDL G

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.