Factsheet for Os12t0284000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G034530.6	Barley	cytosol	89.14	89.14
GSMUA_AchrUn_...	Banana	cytosol, plastid	84.64	84.17
VIT_01s0137g00230.t01	Wine grape	cytosol	81.46	81.46
KRG97505	Soybean	cytosol	80.52	80.37
GSMUA_Achr9P02110_001	Banana	plastid	80.52	79.93
KRH31377	Soybean	cytosol	78.65	79.1
CDY39172	Canola	cytosol	72.1	78.25
Solyc05g014030.2.1	Tomato	cytosol	77.72	77.86
PGSC0003DMT400027900	Potato	cytosol	77.72	77.86
CDY04192	Canola	cytosol	71.72	77.85
CDX83586	Canola	cytosol, plastid	75.47	76.18
CDY13609	Canola	cytosol	75.28	75.99
Bra025182.1-P	Field mustard	cytosol	75.09	75.8
AT3G26100.5	Thale cress	cytosol, plastid	75.28	75.56
Bra017335.1-P	Field mustard	cytosol	75.09	75.52
CDX99731	Canola	cytosol, plastid	75.47	75.33
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	31.09	74.44
Bra036349.1-P	Field mustard	cytosol, plastid	75.09	73.04
CDY40988	Canola	cytosol, plastid	75.09	73.04
KRH59226	Soybean	cytosol	72.47	72.47
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	23.41	72.25
Os02t0597000-01	Rice	cytosol	58.61	58.29
Os08t0430700-02	Rice	cytosol	18.16	24.56
Os04t0435700-01	Rice	plasma membrane	20.22	23.84
Os11t0545800-01	Rice	mitochondrion	17.6	22.12
Os02t0554100-01	Rice	cytosol, plasma membrane	18.35	21.63
Os01t0777800-01	Rice	cytosol	14.42	19.2
Os09t0560450-01	Rice	mitochondrion	15.17	18.54
Os01t0964800-01	Rice	mitochondrion	20.04	18.48
Os03t0599600-01	Rice	mitochondrion	6.37	17.89
Os04t0226400-01	Rice	plastid	6.93	17.05
Os04t0686200-01	Rice	plasma membrane	24.91	12.58
Os05t0384800-01	Rice	cytosol	25.47	12.52
Os01t0700200-01	Rice	cytosol	23.97	12.26
Os05t0545200-00	Rice	cytosol	23.22	12.23
Os01t0952300-00	Rice	cytosol	25.09	11.72
Os05t0106700-00	Rice	mitochondrion	20.22	11.49
Os04t0583700-00	Rice	cytosol	21.72	11.22
Os02t0684900-01	Rice	cytosol	0.19	0.23
Os09t0560500-01	Rice	mitochondrion, plastid	0.0	0.0
Os08t0430600-01	Rice	plastid	0.0	0.0

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	EntrezGene:4351991	ProteinID:ABA97465.1	ProteinID:ABA97466.1	ProteinID:ABA97467.2
EMBL:AK065041	EMBL:AK065992	EMBL:AK098904	ProteinID:BAF29601.1	ProteinID:BAT16730.1	ProteinID:EEE53047.1
InterPro:IPR000408	InterPro:IPR009091	EnsemblPlantsGene:Os12g0284000	EnsemblPlants:Os12t0284000-01	PFAM:PF00415	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	UniProt:Q2QTS8	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SUPFAM:SSF50985	UniParc:UPI0000681500	RefSeq:XP_015619964.1	RefSeq:XP_015619965.1	RefSeq:XP_015619966.1
RefSeq:XP_015619967.1	SEG:seg	:	:	:	:

Description

Regulator of chromosome condensation, RCC1 domain containing protein. (Os12t0284000-01);Similar to predicted protein. (Os12t0284000-02);Regulator of chromosome condensation, RCC1 domain containing protein. (Os12t0284000-03);Hypothetical conserved gene. (Os12t0284000-04)

Coordinates

chr12:+:10771046..10775332

Molecular Weight (calculated)

57541.3 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.117

Length

534 amino acids

Sequence
(BLAST)

001: MDATTSSGAS SSLPLHLIID DALALVSPLQ QSFQRSQRHC FGGSAPGEFP LAANPSIVLH VLTSCNLEPD DLAHLEATCS FFRKPANFPP DFQLSMSELA
101: ALDMCQKRAI FKPMTQQERE MFKQRCGGSW KLVLRFIMAG EACCRREKSQ AIAGPGHSIA VTTSGAVYTF GSNSSGQLGH GSLEEEWRPR IIRSLQGIRI
201: IQAAAGAGRT MLVSDAGRVY AFGKDSFGEV EYAAQGSRVV TTPQLVESLK DIYIVQAAIG NFFTAVLSRE GHVYTFSWGN DMKLGHQTEP NDVQPHLLAG
301: PLENIPVVQI AAGYCYLLAL ACQPSGMSVY SVGCGLGGKL GHGSRTDEKY PRLIEQFQAL NIQPVVVAAG AWHAAVVGKD GRVCTWGWGR YGCLGHGNEE
401: CESVPKVVES LVNVRAVHVA TGDYTTFVVS DKGDVYSFGC GESSSLGHNT ITEGNNRHTN VLSPELVTSL KRTNERVAQI SLTNSIYWNA HTFALTDSGK
501: LYAFGAGDKG QLGTELVAQE SERGTPERVE IDLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.