Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025182.1-P | Field mustard | cytosol | 99.62 | 99.62 |
| CDX83586 | Canola | cytosol, plastid | 98.3 | 98.3 |
| CDY04192 | Canola | cytosol | 86.39 | 92.89 |
| CDY39172 | Canola | cytosol | 86.01 | 92.48 |
| CDX99731 | Canola | cytosol, plastid | 90.93 | 89.91 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 89.79 | 89.29 |
| CDY40988 | Canola | cytosol, plastid | 89.6 | 86.34 |
| VIT_01s0137g00230.t01 | Wine grape | cytosol | 81.66 | 80.9 |
| KRG97505 | Soybean | cytosol | 80.91 | 80.0 |
| KRH31377 | Soybean | cytosol | 79.02 | 78.72 |
| Solyc05g014030.2.1 | Tomato | cytosol | 78.64 | 78.05 |
| PGSC0003DMT400027900 | Potato | cytosol | 78.64 | 78.05 |
| Os12t0284000-01 | Rice | cytosol | 75.99 | 75.28 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 76.37 | 75.23 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 74.67 | 73.97 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 74.29 | 73.05 |
| KRH59226 | Soybean | cytosol | 72.97 | 72.28 |
| PGSC0003DMT400016865 | Potato | cytosol, extracellular, plastid | 23.25 | 71.1 |
| TraesCS5D01G123500.1 | Wheat | mitochondrion, plastid | 28.17 | 66.82 |
| CDY28863 | Canola | cytosol | 63.89 | 65.0 |
| CDX96062 | Canola | plastid | 63.52 | 64.86 |
| CDY01845 | Canola | plastid | 63.33 | 64.8 |
| CDY56518 | Canola | cytosol, plastid | 62.95 | 64.04 |
| CDX97668 | Canola | cytosol | 24.2 | 26.83 |
| CDY56827 | Canola | cytosol | 24.2 | 26.83 |
| CDX69479 | Canola | cytosol | 19.28 | 25.69 |
| CDY26488 | Canola | cytosol | 19.09 | 25.38 |
| CDY34733 | Canola | cytosol | 15.88 | 25.07 |
| CDY43762 | Canola | cytosol | 19.47 | 24.07 |
| CDX81201 | Canola | cytosol | 19.28 | 23.18 |
| CDX84451 | Canola | cytosol | 19.47 | 23.09 |
| CDY69131 | Canola | cytosol | 13.99 | 23.05 |
| CDY60046 | Canola | cytosol | 19.47 | 22.99 |
| CDY31347 | Canola | cytosol | 18.9 | 22.94 |
| CDY46423 | Canola | cytosol | 15.69 | 21.9 |
| CDY16215 | Canola | cytosol | 15.69 | 21.5 |
| CDY39843 | Canola | cytosol | 16.26 | 21.29 |
| CDY57523 | Canola | cytosol | 17.96 | 20.17 |
| CDY43240 | Canola | cytosol | 17.96 | 20.13 |
| CDY40735 | Canola | mitochondrion | 16.45 | 19.91 |
| CDY44785 | Canola | mitochondrion | 16.26 | 19.86 |
| CDY02190 | Canola | mitochondrion | 14.74 | 17.61 |
| CDY51633 | Canola | mitochondrion | 14.74 | 17.57 |
| CDY70949 | Canola | cytosol | 10.96 | 16.38 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 24.57 | 15.76 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 24.39 | 15.62 |
| CDY66504 | Canola | cytosol | 22.87 | 14.67 |
| CDX77871 | Canola | cytosol | 23.44 | 13.07 |
| CDY21795 | Canola | cytosol | 23.44 | 12.96 |
| CDY47138 | Canola | cytosol | 24.39 | 12.32 |
| CDY14709 | Canola | nucleus | 16.07 | 12.3 |
| CDY11586 | Canola | cytosol | 24.39 | 12.25 |
| CDX88324 | Canola | cytosol | 24.39 | 12.16 |
| CDX91165 | Canola | nucleus | 24.57 | 12.12 |
| CDX97187 | Canola | nucleus | 24.2 | 12.1 |
| CDX85690 | Canola | nucleus | 24.2 | 11.96 |
| CDX69686 | Canola | nucleus | 24.2 | 11.96 |
| CDX87557 | Canola | cytosol | 24.2 | 11.93 |
| CDY28580 | Canola | plasma membrane | 23.44 | 11.88 |
| CDY44086 | Canola | plasma membrane, vacuole | 23.44 | 11.79 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 25.14 | 11.72 |
| CDX85076 | Canola | cytosol | 22.87 | 11.66 |
| CDY12764 | Canola | cytosol | 23.06 | 11.64 |
| CDX92532 | Canola | nucleus | 24.39 | 11.58 |
| CDX70876 | Canola | cytosol | 24.2 | 11.48 |
| CDY48550 | Canola | cytosol | 21.17 | 11.43 |
| CDY31624 | Canola | cytosol | 21.17 | 11.39 |
| CDY13998 | Canola | nucleus | 24.01 | 11.38 |
| CDX87989 | Canola | cytosol | 21.36 | 11.28 |
| CDY49416 | Canola | cytosol | 23.06 | 10.9 |
| CDX77534 | Canola | cytosol | 22.87 | 10.89 |
| CDX87986 | Canola | cytosol | 3.59 | 9.22 |
| CDX68076 | Canola | cytosol | 12.48 | 7.95 |
Protein Annotations
| EnsemblPlants:CDY13609 | EnsemblPlantsGene:GSBRNA2T00078021001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF24 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ProteinID:CDY13609 | ProteinID:CDY13609.1 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI0004EEC6CB |
| UniProt:A0A078FL16 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g33140DBnaA06g33140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL16]
Coordinates
chrLK032037:+:229667..232703
Molecular Weight (calculated)
56710.1 Da
IEP (calculated)
6.389
GRAVY (calculated)
-0.206
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATSSGTPG LQYHNIPEQP ASPPVKRQKR QCFGESTTPG EFPLAANPSI VLHVLTECRL DPRDLANLEA TCSFFSQPAN FAPDCSLSLS ELAALDMCNK
101: RVIFKPMNEE EREEMKRRCG GSWKLVLRFL LAGEACCRRE KSQAIAGPGH SIAVTSKGEV YTFGYNNSGQ LGHGHTDEEA RILPVRSLQG IRIIQAAAGA
201: GRTMLISDSG NVYSCGKDSF GEAEYGGQGS KEVTTPQLVT SLKNIFVVQA AIGNFFTAVL SREGKVYTFS WGNDGRLGHQ TEANDVEPRP LLGALENVPV
301: VQIAAGYCYL LALACLPNGS MSVYSVGCGL GGKLGHGSKT DEKFPRVIEQ FQALNIQPRV VAAGAWHAAV VGQDGRVCTW GWGRYGCLGH GNEECESVPK
401: VVEGLSHVKA VHVATGDYTT FVVSEDGDVY SFGCGESASL GHHIAADEQG NRNGNVLSPA VVTSLKQVKE KMVQISLTNS IYWNAHTFAL SESGKLFAFG
501: AGDKGQLGAE LGRDQTERCV PEKVNIDLS
101: RVIFKPMNEE EREEMKRRCG GSWKLVLRFL LAGEACCRRE KSQAIAGPGH SIAVTSKGEV YTFGYNNSGQ LGHGHTDEEA RILPVRSLQG IRIIQAAAGA
201: GRTMLISDSG NVYSCGKDSF GEAEYGGQGS KEVTTPQLVT SLKNIFVVQA AIGNFFTAVL SREGKVYTFS WGNDGRLGHQ TEANDVEPRP LLGALENVPV
301: VQIAAGYCYL LALACLPNGS MSVYSVGCGL GGKLGHGSKT DEKFPRVIEQ FQALNIQPRV VAAGAWHAAV VGQDGRVCTW GWGRYGCLGH GNEECESVPK
401: VVEGLSHVKA VHVATGDYTT FVVSEDGDVY SFGCGESASL GHHIAADEQG NRNGNVLSPA VVTSLKQVKE KMVQISLTNS IYWNAHTFAL SESGKLFAFG
501: AGDKGQLGAE LGRDQTERCV PEKVNIDLS
001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.