CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56518	Canola	cytosol, plastid	97.88	97.88
CDY01845	Canola	plastid	84.62	85.11
CDX96062	Canola	plastid	84.23	84.56
CDY39172	Canola	cytosol	61.35	64.84
CDY04192	Canola	cytosol	61.15	64.63
CDX83586	Canola	cytosol, plastid	65.58	64.46
CDY13609	Canola	cytosol	65.0	63.89
CDX99731	Canola	cytosol, plastid	63.65	61.87
CDY40988	Canola	cytosol, plastid	63.08	59.74
CDY56827	Canola	cytosol	24.81	27.04
CDX97668	Canola	cytosol	24.62	26.83
CDY34733	Canola	cytosol	15.77	24.48
CDX69479	Canola	cytosol	18.65	24.43
CDY26488	Canola	cytosol	18.46	24.12
CDY43762	Canola	cytosol	19.42	23.6
CDY31347	Canola	cytosol	19.42	23.17
CDX81201	Canola	cytosol	19.42	22.95
CDX84451	Canola	cytosol	19.62	22.87
CDY60046	Canola	cytosol	19.62	22.77
CDY69131	Canola	cytosol	13.85	22.43
CDY16215	Canola	cytosol	16.54	22.28
CDY39843	Canola	cytosol	17.12	22.03
CDY46423	Canola	cytosol	15.96	21.9
CDY57523	Canola	cytosol	18.85	20.81
CDY43240	Canola	cytosol	18.85	20.76
CDY40735	Canola	mitochondrion	17.31	20.59
CDY44785	Canola	mitochondrion	17.12	20.55
CDY02190	Canola	mitochondrion	13.85	16.25
CDY51633	Canola	mitochondrion	13.85	16.22
CDY70949	Canola	cytosol	10.96	16.1
CDY20113	Canola	endoplasmic reticulum, extracellular	25.38	16.0
CDY21840	Canola	endoplasmic reticulum, extracellular	25.19	15.86
CDY66504	Canola	cytosol	22.31	14.06
CDY14709	Canola	nucleus	16.92	12.74
CDX77871	Canola	cytosol	22.88	12.54
CDY47138	Canola	cytosol	25.19	12.51
CDY11586	Canola	cytosol	25.19	12.44
CDY21795	Canola	cytosol	22.88	12.43
CDY31624	Canola	cytosol	23.27	12.31
CDX88324	Canola	cytosol	24.81	12.16
CDX87557	Canola	cytosol	24.81	12.02
CDX87989	Canola	cytosol	23.08	11.98
CDX97187	Canola	nucleus	24.23	11.91
CDY28580	Canola	plasma membrane	23.85	11.88
CDY44086	Canola	plasma membrane, vacuole	23.85	11.79
CDX69686	Canola	nucleus	24.23	11.78
CDX85690	Canola	nucleus	24.23	11.78
CDX91165	Canola	nucleus	24.23	11.74
CDX92532	Canola	nucleus	25.0	11.67
CDY48550	Canola	cytosol	21.92	11.63
CDY12764	Canola	cytosol	23.27	11.55
CDY13998	Canola	nucleus	24.62	11.47
CDX85076	Canola	cytosol	22.88	11.46
CDX88891	Canola	cytosol, mitochondrion, nucleus	25.0	11.45
CDX70876	Canola	cytosol	24.04	11.21
CDY49416	Canola	cytosol	23.27	10.81
CDX77534	Canola	cytosol	22.69	10.62
CDX87986	Canola	cytosol	3.65	9.22
CDX68076	Canola	cytosol	12.69	7.95

Protein Annotations

EnsemblPlants:CDY28863	EnsemblPlantsGene:GSBRNA2T00041542001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ProteinID:CDY28863	ProteinID:CDY28863.1	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0004EE25AF
UniProt:A0A078GW46	MapMan:35.1	:	:	:	:

Description

BnaC06g26510DBnaC06g26510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW46]

Coordinates

chrLK032227:-:225095..227329

Molecular Weight (calculated)

55887.1 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.016

Length

520 amino acids

Sequence
(BLAST)

001: MDTTITTATS NGVSPAATLQ LHSIIPENPT IAMELPSFVS LKRQFLGNSA PGEFFLASCP SIALHATCSF FRKPANFSPD LELSISEVAA LDICQKRAIF
101: KPMGEEERQE IKRKCGGSWK LVLSFLLAGE FGYRREKSQA LAGPGHSIAV TSKGVVYSFG SNGSGQLGHG TVEDTWQPQP IRSLNGIRII QAALGADRTM
201: LISDAGEVYA FGKDCFSDPG LEVQQTKVIT TPQRVKSLTE IFVVQAAIGY HFTAVLSREG RVYTLSWGKD EKLGHGTDLN CLLPQPLLGA LENVPVVQIA
301: AGFCYLLALA FHPTGMSVYS VGCGLGGKLG HGSTISEKQP RLIEEFSLLK MEPVMISAGA WHAAVVGRDG RVCTWGWGRY GCLGHGTEEL EMAPKVVEGL
401: KDVKAVHVAA GEYTTFVVCD DGQVYSFGYG EANLGQQGDL EENTLTPRLV SSLKETKERV VHVSLTKSVS FPWTGHTFAM TESGTLYAFG SGGRGQLGVK
501: LGDNIMEREE PAKVIGIDLS

Best Arabidopsis Sequence Match ( AT3G26100.1 )
(BLAST)

001: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
101: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
201: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
301: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
401: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.