CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66504	Canola	cytosol	71.97	90.55
CDX77534	Canola	cytosol	96.53	90.19
AT3G23270.2	Thale cress	cytosol	87.38	86.05
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	94.99	77.64
CDY12764	Canola	cytosol	72.45	71.76
CDY49416	Canola	cytosol	72.06	66.85
VIT_05s0049g01140.t01	Wine grape	cytosol	65.22	63.81
PGSC0003DMT400034994	Potato	cytosol	60.4	60.58
Solyc03g005590.1.1	Tomato	cytosol, plastid	62.04	60.13
KRH00393	Soybean	cytosol	58.38	56.69
KRH69117	Soybean	cytosol	57.13	55.01
KRH40796	Soybean	cytosol	39.31	54.4
KRH31700	Soybean	cytosol	56.26	54.17
CDY70949	Canola	cytosol	18.21	53.39
Os01t0700200-01	Rice	cytosol	52.89	52.59
TraesCS1B01G384600.1	Wheat	cytosol	53.08	52.53
TraesCS1A01G366800.1	Wheat	cytosol	52.79	52.49
TraesCS1D01G372300.1	Wheat	cytosol	53.08	52.33
HORVU1Hr1G078890.1	Barley	cytosol	52.89	52.24
EES19890	Sorghum	cytosol	50.87	51.76
Zm00001d011660_P003	Maize	cytosol	51.64	50.71
Os05t0545200-00	Rice	cytosol	49.42	50.59
Zm00001d038882_P002	Maize	cytosol	51.35	50.52
EES01332	Sorghum	cytosol	51.16	50.28
CDY11586	Canola	cytosol	50.1	49.38
CDY47138	Canola	cytosol	49.61	49.19
CDX88324	Canola	cytosol	49.61	48.54
CDX87557	Canola	cytosol	50.1	48.46
CDX87986	Canola	cytosol	9.54	48.06
CDY48550	Canola	cytosol	44.03	46.63
CDX68076	Canola	cytosol	35.84	44.82
KRH65503	Soybean	cytosol, mitochondrion, nucleus	43.83	43.5
CDX69686	Canola	nucleus	44.41	43.08
CDX97187	Canola	nucleus	43.45	42.63
CDX85690	Canola	nucleus	43.93	42.62
CDX91165	Canola	nucleus	44.03	42.59
CDX92532	Canola	nucleus	43.74	40.75
CDY13998	Canola	nucleus	43.55	40.5
CDX88891	Canola	cytosol, mitochondrion, nucleus	43.93	40.18
CDX70876	Canola	cytosol	42.77	39.82
CDY28580	Canola	plasma membrane	38.05	37.84
CDY44086	Canola	plasma membrane, vacuole	38.25	37.74
CDX77871	Canola	cytosol	32.85	35.93
CDY21795	Canola	cytosol	33.04	35.84
CDY31624	Canola	cytosol	33.43	35.3
CDX87989	Canola	cytosol	33.62	34.83
CDY46423	Canola	cytosol	12.24	33.51
CDY69131	Canola	cytosol	10.31	33.33
CDY16215	Canola	cytosol	11.95	32.12
CDY43762	Canola	cytosol	13.2	32.01
CDY31347	Canola	cytosol	13.2	31.42
CDX84451	Canola	cytosol	13.49	31.39
CDY39843	Canola	cytosol	12.14	31.19
CDX81201	Canola	cytosol	13.2	31.14
CDY60046	Canola	cytosol	13.39	31.03
CDY34733	Canola	cytosol	8.86	27.46
CDY44785	Canola	mitochondrion	11.37	27.25
CDX69479	Canola	cytosol	10.4	27.2
CDY26488	Canola	cytosol	10.31	26.88
CDX97668	Canola	cytosol	12.33	26.83
CDY56827	Canola	cytosol	12.33	26.83
CDY40735	Canola	mitochondrion	11.27	26.77
CDY43240	Canola	cytosol	11.66	25.64
CDY57523	Canola	cytosol	11.56	25.48
CDY02190	Canola	mitochondrion	10.5	24.61
CDY51633	Canola	mitochondrion	10.5	24.55
CDY39172	Canola	cytosol	11.46	24.19
CDX96062	Canola	plastid	12.04	24.13
CDY04192	Canola	cytosol	11.37	23.98
CDY01845	Canola	plastid	11.85	23.79
CDX99731	Canola	cytosol, plastid	12.04	23.36
CDY56518	Canola	cytosol, plastid	11.46	22.88
CDY28863	Canola	cytosol	11.46	22.88
CDY13609	Canola	cytosol	11.66	22.87
CDX83586	Canola	cytosol, plastid	11.56	22.68
CDY40988	Canola	cytosol, plastid	11.46	21.68
CDY14709	Canola	nucleus	12.24	18.38
CDY20113	Canola	endoplasmic reticulum, extracellular	12.24	15.39
CDY21840	Canola	endoplasmic reticulum, extracellular	12.24	15.38

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078D719	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDX85076	ProteinID:CDX85076	ProteinID:CDX85076.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00142543001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EE5365
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaC07g08300D

Coordinates

chrLK031840:+:202069..206339

Molecular Weight (calculated)

113038.0 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.453

Length

1038 amino acids

Sequence
(BLAST)

0001: MADPASYVYH ERDIDQALIV LKKGTQLVKY SRKGKPKFRA FRLSPDEKSL IWFSHGEEKG LKLSEVSRIV PGQRTPVFKR FLRPEKDHLS FSLLFNNRER
0101: SLDLICKDKA ETEIWFAGLK YLIERSRNRR ARSEIPEIND SDYFSTGRQS IDVFPNNIPR GRTSIDLGSD VGYERGNMLR PSTDGFRISV SSTPSCSSGG
0201: SGPDDIESLG DVYVWGEVWS DGILPDGTIT KETVKTDVLT PRPLESNVVL DVHQIVCGVR HVALVTRQGE VFTWGEEAGG RLGHGIQVDI SRPKLVEFLA
0301: LTNIDFVACG EYHTCVVSTS GDLFSWGDGI HNVGLLGHGS DISHWIPKRV SGPLEGLQVL SVACGTWHSA LATANGKLFT FGDGAFGVLG HGNRESVSCP
0401: KEVQSLNGLK TVKVACNIWH TVAIVEVMGQ TGTSMSSRKL FTWGDGEKNR LGHGNKETYL LPTCVSSLID YNFHQIACGH TFTVALTTSG HVFTMGGTSH
0501: GQLGNSISGG KLPCLVQDRL VGEFVEEIAC GDHHVAVLTS RSEVFTWGKG ANGRLGHGDT DDRRTPTLVE ALRDRHVKSL SCGSNFTSSI CIHKWVSGAD
0601: QSICSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYSKLK AAESGYISNG NRTSVATPGR SMDGSVRIDK GTTRSSKVLS
0701: TGNNTESGKT SRLGVRPDAS SVRASQVPSL QQLKDIAFPA SLTAIQNALK PAVAPAAVPA RLLVGPISSP PRTSGFSRSV IDSLKKTNEV MNQEMTKLQS
0801: QVKNLKQKCN NQGTEIQRFQ KAAKEAFELA AKQSSKHKSA TEALKSVAEQ LKGLKEKLPP EVSESEAFES INSQAEVYLN ANEVTETSLL TTSILDQQET
0901: SPTGNTQDQK IDEQVSSKSI SETSNSSKPV PTESSSSSSS RTGGKESKEQ FEPGVYVTFA VDMNGNKIFR RVRFSKKRFD EHQAEDWWTK NKDRLLKWYS
1001: PNSSSSPVAS DSSIAPSPPS EPPSDPSVSE KDNEAEAD

Best Arabidopsis Sequence Match ( AT3G23270.2 )
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.