CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49416	Canola	cytosol	96.37	90.26
AT4G14368.1	Thale cress	cytosol	81.3	77.03
CDY66504	Canola	cytosol	59.26	75.27
CDX85076	Canola	cytosol	71.76	72.45
CDX77534	Canola	cytosol	71.56	67.51
VIT_05s0049g01140.t01	Wine grape	cytosol	63.74	62.96
Solyc03g005590.1.1	Tomato	cytosol, plastid	59.83	58.54
PGSC0003DMT400034994	Potato	cytosol	57.35	58.07
KRH00393	Soybean	cytosol	57.82	56.69
KRH69117	Soybean	cytosol	57.54	55.94
KRH31700	Soybean	cytosol	56.77	55.19
CDY70949	Canola	cytosol	18.42	54.52
KRH40796	Soybean	cytosol	38.55	53.87
EES19890	Sorghum	cytosol	52.0	53.43
TraesCS1A01G366800.1	Wheat	cytosol	53.05	53.26
HORVU1Hr1G078890.1	Barley	cytosol	52.96	52.81
Os05t0545200-00	Rice	cytosol	51.05	52.76
TraesCS1D01G372300.1	Wheat	cytosol	52.96	52.71
TraesCS1B01G384600.1	Wheat	cytosol	52.48	52.43
Os01t0700200-01	Rice	cytosol	52.0	52.2
Zm00001d038882_P002	Maize	cytosol	52.1	51.75
Zm00001d011660_P003	Maize	cytosol	52.19	51.75
EES01332	Sorghum	cytosol	51.91	51.52
CDY11586	Canola	cytosol	50.0	49.76
CDY47138	Canola	cytosol	49.62	49.67
CDX88324	Canola	cytosol	49.33	48.73
CDX87557	Canola	cytosol	49.71	48.56
CDY48550	Canola	cytosol	44.08	47.14
CDX87986	Canola	cytosol	9.06	46.12
CDX68076	Canola	cytosol	35.59	44.94
CDX69686	Canola	nucleus	43.89	42.99
KRH65503	Soybean	cytosol, mitochondrion, nucleus	42.65	42.73
CDX85690	Canola	nucleus	43.61	42.71
CDX97187	Canola	nucleus	42.94	42.53
CDX91165	Canola	nucleus	43.51	42.5
CDX92532	Canola	nucleus	44.08	41.47
CDY13998	Canola	nucleus	43.99	41.31
CDX88891	Canola	cytosol, mitochondrion, nucleus	44.27	40.88
CDX70876	Canola	cytosol	43.03	40.45
CDX77871	Canola	cytosol	34.45	38.04
CDY21795	Canola	cytosol	34.45	37.72
CDY28580	Canola	plasma membrane	37.31	37.45
CDY44086	Canola	plasma membrane, vacuole	37.5	37.36
CDY31624	Canola	cytosol	32.25	34.38
CDX87989	Canola	cytosol	32.73	34.23
CDY69131	Canola	cytosol	10.11	33.02
CDY46423	Canola	cytosol	11.83	32.72
CDY16215	Canola	cytosol	11.93	32.38
CDY43762	Canola	cytosol	13.07	32.01
CDX84451	Canola	cytosol	13.36	31.39
CDY31347	Canola	cytosol	12.88	30.96
CDY39843	Canola	cytosol	11.93	30.94
CDX81201	Canola	cytosol	12.98	30.91
CDY60046	Canola	cytosol	13.17	30.8
CDY44785	Canola	mitochondrion	11.74	28.41
CDY40735	Canola	mitochondrion	11.83	28.38
CDX69479	Canola	cytosol	10.31	27.2
CDY34733	Canola	cytosol	8.68	27.16
CDY26488	Canola	cytosol	10.21	26.88
CDY43240	Canola	cytosol	11.74	26.06
CDY57523	Canola	cytosol	11.64	25.9
CDY56827	Canola	cytosol	11.74	25.79
CDX97668	Canola	cytosol	11.74	25.79
CDY02190	Canola	mitochondrion	10.78	25.51
CDY51633	Canola	mitochondrion	10.78	25.45
CDY39172	Canola	cytosol	11.45	24.39
CDY04192	Canola	cytosol	11.36	24.19
CDX96062	Canola	plastid	11.83	23.94
CDX99731	Canola	cytosol, plastid	12.12	23.74
CDY01845	Canola	plastid	11.64	23.6
CDY56518	Canola	cytosol, plastid	11.64	23.46
CDY28863	Canola	cytosol	11.55	23.27
CDY13609	Canola	cytosol	11.64	23.06
CDX83586	Canola	cytosol, plastid	11.64	23.06
CDY40988	Canola	cytosol, plastid	11.45	21.86
CDY14709	Canola	nucleus	12.12	18.38
CDY20113	Canola	endoplasmic reticulum, extracellular	11.74	14.91
CDY21840	Canola	endoplasmic reticulum, extracellular	11.74	14.89

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078FIE9	UniProt:A0A078FIE9
InterPro:BRX_N	InterPro:Brevis_radix_dom	EnsemblPlants:CDY12764	ProteinID:CDY12764	ProteinID:CDY12764.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00070355001	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI0004EE3E44	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC04g28770DBnaC04g28770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIE9]

Coordinates

chrLK032026:-:746026..749959

Molecular Weight (calculated)

114640.0 Da

IEP (calculated)

8.984

GRAVY (calculated)

-0.541

Length

1048 amino acids

Sequence
(BLAST)

0001: MADPSSYVNH DRDVDQALIA LKKGCQLLKY SRKGRPKFRS FRLSRDETTL LWLSHGEEKS LKLSTVSRLL PGQRTAVFRR YLRPEKDYLS FSLIYHNGDR
0101: SLDLICKDKA ETEVWFTGLK SLIRKNHNKQ ARSEVPEVCI HDSDIFSSGR PSTASLEFIP NNNNRRGRTS LDLGPRNNSP TPFRDSDVAP ERISMLRPST
0201: DGFRISISSA PSCSSGGSGG PDDIESLGDV YVWGEVWSDG ISSSYNGTMN SKTVRTDVLI PRPLESNVVL DVHQIACGIR HISLVTRQGE VFTWGEEAGG
0301: RLGHGIQVDV SRPKLVEFLA LTNIDFVACG EYHTCAVSTA GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSSLK TMKVACGVWH TVAIVEVINQ TSTSVSSRKL FTWGDGDKNR LGHGNKETYL IPTCVSSLID YNFQQIACGN
0501: TLTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEIAS GDHHVAVLTS RNEVFTWGKG SNGRLGHGDT EDRKTPTLVE ALKERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQP FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYAKLK AGGDNSNAAN RYNTTPSAVR
0701: PVRETRSSRI ILTPKTEPVK YSEVRSSRSE SSIVRSSQVP ALQQLKDVAF PSSLSAIQNA FKPNSTSRRG GSPPRSSGFS RSVVDNLKKT SGKINQEMTK
0801: LQSQVRKLKQ KCDSQGIEIQ RLRKTAREAS ELAIRHSSKH KAATEVMKSV AEHLRELKEK LPPEVSKCEA FESMNSQAEA YLNASEAAET SQDTTLSENS
0901: QDQNIEEHPS ASNGGAMMSQ EPSNTTNINP HPSDSRPPAE ASSSPSKSGG KELIEQFEPG VYVTYVLHKN GGKIFRRVRF SKRRFDEHQA EEWWNSKKDR
1001: MLKSYSHQVS SSGPMATESV PTPTSVQPPS SPTQPNSDDQ EGGLKISS

Best Arabidopsis Sequence Match ( AT4G14368.4 )
(BLAST)

0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.